Gene Pnec_0428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0428 
SymbolrpsF 
ID6184114 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp381651 
End bp382025 
Gene Length375 bp 
Protein Length124 aa 
Translation table11 
GC content46% 
IMG OID641671119 
Product30S ribosomal protein S6 
Protein accessionYP_001797316 
Protein GI171463203 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0360] Ribosomal protein S6 
TIGRFAM ID[TIGR00166] ribosomal protein S6 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value0.531029 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCATT ATGAAATCGT CTTTATCGTC CATCCGGACC AAAGCGAGCA AGTGCCAGCG 
ATGATCGATC GCTACAAAGC TACATTAGCA GCTGTAGGCG GCAAAATTCA TCGTATGGAA
GACTGGGGTC GTCGTCAGAT GGCTTACATG ATCGACAAAC TTGCTAAAGC CCACTACGTT
TGCATGAACA TTGAGTGCGA CCAGAAAACT CTGGAAGAAC TCGAGCATGC GTTCAAATTT
AACGATGCAG TTTTGCGTCA TCTCATCATC AAGACTAAGA AAGCTGAAAC AGAGCCTTCC
ATCATGATGA AAGAAGTGCA ACATGAAGAA GCGCGTAAAT CTGCTCAATC TGACGCTCCT
GTAGCGGCAG CCTAA
 
Protein sequence
MRHYEIVFIV HPDQSEQVPA MIDRYKATLA AVGGKIHRME DWGRRQMAYM IDKLAKAHYV 
CMNIECDQKT LEELEHAFKF NDAVLRHLII KTKKAETEPS IMMKEVQHEE ARKSAQSDAP
VAAA