| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0410 |
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| Symbol | |
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| ID | 6183070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 364499 |
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| End bp | 365923 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641671103 |
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| Product | protease Do |
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| Protein accession | YP_001797302 |
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| Protein GI | 171463189 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.134213 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 79 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTATTT TTAGTCTTGG GCAATTTGCA TTTATTCCAT CTGTCTCCGC GCAAAATCCT
CGGGTAACGA TCCCCGATTT TGTCGATTTG GTTGAGCGCG CTAGTCCCGC TGTTGTGAAT
ATTCGCACCA CCGAAAAAGT CGTAACGCAA CAGACTCAAG GCGGCATTCC TGGAATGCCT
GAAGATCAAG CGGAATTTTT CCGTCGCTTC TTTGGGATGC CTATTCCTGG AATTCCAAAT
GGTCCCAAAC AAACGCAACC AAATCCAGGC AAGCCACAAG AAGCAGATCG CGGTGTGGGT
TCTGGTTTCA TTATCGAATC GAATGGTTTG ATTTTGACAA ACGCGCACGT GGTCGAGGGT
GCTACAACTA TTTATGTGAC CTTGACTGAT AAGCGTGAGT TCAAGGCGAA GTTACTGGGT
ATAGACAAGC GTACTGACGT AGCGGTTGTC AAAATTGAAG CACGTGATTT GCCGAAGCTA
CCTTTGGGGG ATTCTTCTAA GGTACGTGTT GGTGAGTGGG TTCTGGCGAT TGGATCACCG
TTTGGTCTTG AGAATACAGT CACCGCAGGG ATTGTGTCTG CTAAGAGTCG TGATACTGGC
GACTACTTAC CATTTATCCA AACTGACGTT GCGGTTAACC CAGGAAACTC TGGTGGCCCG
CTCTTAAATA CTGCCGGTCA AGTTATTGGT ATTAATTCAC AAATTTTTAG TCGCTCTGGC
GGCTACATGG GAATTTCATT CGCCATTCCA ATTGACGAGG CGATGCGTGT TGCAGATCAG
TTGCGTACCA ATGGCAAGAT GACGCGTGGT CGTATTGGTG TTGCTTTGGG TGAGATGATC
AAGGAAGTGG CTGAGAGTTT AGGTTTGGGT AAACCTCGGG GTGCTTACGT ACGCAATGTT
GAGCCAGGCG GTCCGGCGGC GGCTGGTGGA ATTGAGGCCG GCGATGTGAT TCTGAGTTTT
AATGGCCGCG ATATTTCTAA GTCAGCTGAT TTACCAAGAG TGGTTGGTGA AACCAAGCCT
GGAACTTCAG TGCTGGTACA GGTTTGGCGT AAGGGTGGTA CACGTGATTT GACTGTGACC
GTAAGTGATA CAGAATCGAC TCAGGCTGCA AATAAGAAGC CAGATGCCCC AGCAGCAAAT
GGCAATAGTG CAAATGCCCT TGGGGTTGCT GTAGGTGAGC TATCAGATGC CAAAAAGAAG
GATTTGAATA TCAAAGGTGG GGTTGAGGTC ACTGGTTTAG GGGATGGTCC CCTGGCTAAG
GCTGGAATTC GGCCTGGTGA TGTCATTATT CGGGTTGCAG ATGCCGATAT TACAGGTGTT
AAGCAGTTTA AATCTTTGGT AAAGGGCTTA GATGCCAACA AGGCCGTTCC GGTCTTTATA
TGCCGCGCTG ACAGCACTTT GGTAGTCCCC GTAAGATCCA AATAA
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| Protein sequence | MTIFSLGQFA FIPSVSAQNP RVTIPDFVDL VERASPAVVN IRTTEKVVTQ QTQGGIPGMP
EDQAEFFRRF FGMPIPGIPN GPKQTQPNPG KPQEADRGVG SGFIIESNGL ILTNAHVVEG
ATTIYVTLTD KREFKAKLLG IDKRTDVAVV KIEARDLPKL PLGDSSKVRV GEWVLAIGSP
FGLENTVTAG IVSAKSRDTG DYLPFIQTDV AVNPGNSGGP LLNTAGQVIG INSQIFSRSG
GYMGISFAIP IDEAMRVADQ LRTNGKMTRG RIGVALGEMI KEVAESLGLG KPRGAYVRNV
EPGGPAAAGG IEAGDVILSF NGRDISKSAD LPRVVGETKP GTSVLVQVWR KGGTRDLTVT
VSDTESTQAA NKKPDAPAAN GNSANALGVA VGELSDAKKK DLNIKGGVEV TGLGDGPLAK
AGIRPGDVII RVADADITGV KQFKSLVKGL DANKAVPVFI CRADSTLVVP VRSK
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