Gene Pnec_0410 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0410 
Symbol 
ID6183070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp364499 
End bp365923 
Gene Length1425 bp 
Protein Length474 aa 
Translation table11 
GC content48% 
IMG OID641671103 
Productprotease Do 
Protein accessionYP_001797302 
Protein GI171463189 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.134213 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones79 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTATTT TTAGTCTTGG GCAATTTGCA TTTATTCCAT CTGTCTCCGC GCAAAATCCT 
CGGGTAACGA TCCCCGATTT TGTCGATTTG GTTGAGCGCG CTAGTCCCGC TGTTGTGAAT
ATTCGCACCA CCGAAAAAGT CGTAACGCAA CAGACTCAAG GCGGCATTCC TGGAATGCCT
GAAGATCAAG CGGAATTTTT CCGTCGCTTC TTTGGGATGC CTATTCCTGG AATTCCAAAT
GGTCCCAAAC AAACGCAACC AAATCCAGGC AAGCCACAAG AAGCAGATCG CGGTGTGGGT
TCTGGTTTCA TTATCGAATC GAATGGTTTG ATTTTGACAA ACGCGCACGT GGTCGAGGGT
GCTACAACTA TTTATGTGAC CTTGACTGAT AAGCGTGAGT TCAAGGCGAA GTTACTGGGT
ATAGACAAGC GTACTGACGT AGCGGTTGTC AAAATTGAAG CACGTGATTT GCCGAAGCTA
CCTTTGGGGG ATTCTTCTAA GGTACGTGTT GGTGAGTGGG TTCTGGCGAT TGGATCACCG
TTTGGTCTTG AGAATACAGT CACCGCAGGG ATTGTGTCTG CTAAGAGTCG TGATACTGGC
GACTACTTAC CATTTATCCA AACTGACGTT GCGGTTAACC CAGGAAACTC TGGTGGCCCG
CTCTTAAATA CTGCCGGTCA AGTTATTGGT ATTAATTCAC AAATTTTTAG TCGCTCTGGC
GGCTACATGG GAATTTCATT CGCCATTCCA ATTGACGAGG CGATGCGTGT TGCAGATCAG
TTGCGTACCA ATGGCAAGAT GACGCGTGGT CGTATTGGTG TTGCTTTGGG TGAGATGATC
AAGGAAGTGG CTGAGAGTTT AGGTTTGGGT AAACCTCGGG GTGCTTACGT ACGCAATGTT
GAGCCAGGCG GTCCGGCGGC GGCTGGTGGA ATTGAGGCCG GCGATGTGAT TCTGAGTTTT
AATGGCCGCG ATATTTCTAA GTCAGCTGAT TTACCAAGAG TGGTTGGTGA AACCAAGCCT
GGAACTTCAG TGCTGGTACA GGTTTGGCGT AAGGGTGGTA CACGTGATTT GACTGTGACC
GTAAGTGATA CAGAATCGAC TCAGGCTGCA AATAAGAAGC CAGATGCCCC AGCAGCAAAT
GGCAATAGTG CAAATGCCCT TGGGGTTGCT GTAGGTGAGC TATCAGATGC CAAAAAGAAG
GATTTGAATA TCAAAGGTGG GGTTGAGGTC ACTGGTTTAG GGGATGGTCC CCTGGCTAAG
GCTGGAATTC GGCCTGGTGA TGTCATTATT CGGGTTGCAG ATGCCGATAT TACAGGTGTT
AAGCAGTTTA AATCTTTGGT AAAGGGCTTA GATGCCAACA AGGCCGTTCC GGTCTTTATA
TGCCGCGCTG ACAGCACTTT GGTAGTCCCC GTAAGATCCA AATAA
 
Protein sequence
MTIFSLGQFA FIPSVSAQNP RVTIPDFVDL VERASPAVVN IRTTEKVVTQ QTQGGIPGMP 
EDQAEFFRRF FGMPIPGIPN GPKQTQPNPG KPQEADRGVG SGFIIESNGL ILTNAHVVEG
ATTIYVTLTD KREFKAKLLG IDKRTDVAVV KIEARDLPKL PLGDSSKVRV GEWVLAIGSP
FGLENTVTAG IVSAKSRDTG DYLPFIQTDV AVNPGNSGGP LLNTAGQVIG INSQIFSRSG
GYMGISFAIP IDEAMRVADQ LRTNGKMTRG RIGVALGEMI KEVAESLGLG KPRGAYVRNV
EPGGPAAAGG IEAGDVILSF NGRDISKSAD LPRVVGETKP GTSVLVQVWR KGGTRDLTVT
VSDTESTQAA NKKPDAPAAN GNSANALGVA VGELSDAKKK DLNIKGGVEV TGLGDGPLAK
AGIRPGDVII RVADADITGV KQFKSLVKGL DANKAVPVFI CRADSTLVVP VRSK