| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0397 |
|---|
| Symbol | |
|---|
| ID | 6184291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 353965 |
|---|
| End bp | 354972 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641671090 |
|---|
| Product | pseudouridine synthase, RluA family |
|---|
| Protein accession | YP_001797289 |
|---|
| Protein GI | 171463176 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 80 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCTG AACCCATTTC GAAGCCTACC AAAGTAAAAA CACCTGCTCC TGCTGCAGTG
CACCTCCAGA TCATTGGCCC GGAAGAGGCA GGCCAGCGCT TGGATAACTA TTTATTGCGC
TGGGCCAAAG GGGTTCCCAA AAGCCACGTT TATCGAATTA TTCGATCCGG TGAAGTGCGG
GTGAATAAAA AGCGGGCTGA ACCCACAACT CGCCTGATTG AAGGTGATGT TGTGCGTCTC
CCCCCAGTTC GAATTGCCGA ACCAGCTCAA ATGGCTGCCG TTAATTCCGC TCAAACCAAA
TTCCGGGCGC ACGGCTATTC AGACAAAATG CCGATTCTGT TTGAAGATGA GGCACTCTTA
ATAGTGAATA AGCCAGCCGG TTTGGCTGTG CATGGTGGCT CAGGCATTGC CCTGGGGGTA
ATTGAAACTC TGCGTATCAC TCGACCCGAA CTCAAATTTT TGGAATTGGT GCATCGTTTA
GACCGAGACA CCTCAGGCGT TTTGTTTTTG GCTAAAAAGC GTAGCGCTTT GGTTGAGCTC
CACCGTCAGA TCCGTGAAGA TCAAGCTGAC AAACGCTATT ACTTGTTGGC TCATGGTGAA
ATCGTGCAAG GCGCCCAAAC CATGCAGCTC AAATATCCAC TGCATAAATA TCTTCTGCCA
AATGGCGAGC GCCGTGTGCG CGTTGATCCA GATGGCTTGC CTAGTCATAC TGCTTTAAGA
GTCACTAAGG CGCTCAAGCG TGAAGGTGCT GCTATTACGC TTGCAGAGGC TCAGCTCAAG
ACAGGGAGAA CCCATCAGAT TCGGGTGCAC CTCCAAAAAT TAGGGCACGC GATTTTGGGC
GATGACAAGT ATGGCTTTGA GGATCTAGAT AAAGTGATTA AATCCAAACG TCTTTATCTG
CATGCCCATT TAGCTGGCTT TACTCATCCA CGCACTGGAG AGAAGATGCG TATTGAATCA
CCATTGCCTC CAGAATTTAC CGCCATGATG AAAACCTTTG AGCAGTAA
|
|---|
| Protein sequence | MKSEPISKPT KVKTPAPAAV HLQIIGPEEA GQRLDNYLLR WAKGVPKSHV YRIIRSGEVR
VNKKRAEPTT RLIEGDVVRL PPVRIAEPAQ MAAVNSAQTK FRAHGYSDKM PILFEDEALL
IVNKPAGLAV HGGSGIALGV IETLRITRPE LKFLELVHRL DRDTSGVLFL AKKRSALVEL
HRQIREDQAD KRYYLLAHGE IVQGAQTMQL KYPLHKYLLP NGERRVRVDP DGLPSHTALR
VTKALKREGA AITLAEAQLK TGRTHQIRVH LQKLGHAILG DDKYGFEDLD KVIKSKRLYL
HAHLAGFTHP RTGEKMRIES PLPPEFTAMM KTFEQ
|
|---|
| |