| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0369 |
|---|
| Symbol | |
|---|
| ID | 6184042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 332535 |
|---|
| End bp | 334769 |
|---|
| Gene Length | 2235 bp |
|---|
| Protein Length | 744 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641671069 |
|---|
| Product | isocitrate dehydrogenase, NADP-dependent |
|---|
| Protein accession | YP_001797268 |
|---|
| Protein GI | 171463155 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCAG AGAAATCAAA GATTATTTAC ACGCTGACAG ATGAAGCGCC ACTTTTGGCG
ACTTGCGCAT TTCTGCCAAT TATTCGTACT TTTACAGCAC CTGCTGGCGT AGAGATTGTG
AAGAGCGACA TTTCTGTTGC TGCTCGTATT TTGGCTGAGT TCAATGATTG TCTTACTCCT
GAGCAGCAAG TTTTGGATAA CTTGGGCGCG CTCGGCAAGA TGACTTTGTT GCCTGACATA
AATATTATTA AGTTGCCAAA CATTAGCGCT TCTGTTCCCC AGTTGCTCGC AGCAATTAAA
GAGTTGCAGT CCAAGGGCTA TAAGATCCCA GATTTCCCTG AAGATCCGAA AACGGATGAA
GAAAAATCTA TTCGTACGCG CTACTCCAAA TGCTTGGGAA GCTCAGTTAA CCCGGTGTTA
CGTGAAGGCA ACTCCGATCG CCGTGCGCCA CCCGCTGTAA AGCGTTACGC TCGCAAAAAC
CCGCACTCTA TGGGTGAGTG GAGCCAAGCT TCCCGTACGC ACGTATCCCA TATGCATGGC
GGCGACTTCT ACTCTAGCGA GAAGTCAATG ACTATGACTA AGGCTTGTGA TGTGAAGATG
GATTTGGTAA CCAAGAGCGG CAAGACAATT GTTCTTAAGC CAAAAGTTTC TTTGCTGGCT
GGCGAAATTA TCGACAGCAT GTATATGAGC AAAAAAGCAC TTTGTGAGTT CTATGAGAAA
GAAATCGAAG ATGCTTATAA GACTGGCATG ATGTTGTCCT TGCACGTGAA AGCCACCATG
ATGAAGGTCT CACACCCAAT TGTGTTTGGT CATGCAGTAA AGATCTTCTA CAAAGACGCT
TTTGAAAAAC ACGCGAAGTT GTTTGAAGAG TTGAGCGTAA ATGTTAACAA CGGTATGAGC
AGTCTGTATG AAAAGATTAA GACTTTGCCA GAATCAAAGC GCGAAGAAAT CATTCAAGAC
TTACATGCTT GCTATGAGCA TCGTCCAGCA TTGGCAATGG TTGATTCCGC TAAAGGTATT
ACCAACCTTC ATTCTCCAAG CGATGTGATT GTGGATGCCT CTATGCCTGC GATGATTTGT
GTTGGTGGCA AGATGTGGGG TGCGGACGGT CGCTTGCATG ACACTAAGGC TGTGATTCCA
GAAAGTACCT TTGCCCGTAT CTATCAAGAA ATGATTAATT TCTGTAAGAC ACACGGCAAT
TTTGATCCAA AAACCATGGG CACAGTGCCT AACGTAGGTT TGATGGCTCA ACAGGCTGAA
GAGTATGGCT CACATGACAA AACATTTGAA ATTCCTGAGG CTGGTGTAGC GCGTATCGTT
GCTGATGATG GCACTGTATT GCTTGAGCAA AATGTAGAAG AGGGCGATAT CTGGCGTATG
TGTCAGGTTA AAGATGCGCC AATTCGTGAC TGGGTCAAAT TGGCAGTAAA CCGTGCACGT
CTTTCCAATA CTCCAGCAGT ATTCTGGCTC GATGAGTACC GTCCGCACGA AGCCGAGTTG
ATCAAGAAGG TAAATACCTA TCTCAAAGAT TACGATCTTA CAGGCGTAGA TATTCAGATC
ATGTCTCAGA CTCGTGCAAT GCGTTACACC TTAGAGCGTG TAATTCGTGG TAAAGATACT
ATCTCCGTAA CAGGAAATAT TTTGCGTGAT TACCTCACCG ATTTGTTCCC AATTATGGAA
TTGGGAACTA GTGCCAAGAT GTTATCTATT GTGCCTTTGA TGGCAGGTGG CGGCTTGTTC
GAGACTGGTG CAGGCGGTTC TGCTCCAAAG CATGTTCAAC AGTTGGTAGA AGAAAACCAC
TTACGTTGGG ATTCACTTGG TGAGTTCTTG GCTTTAGCAG TTTCTCTCGA GGACATCGGC
GATAAGACTG GTAATCAAAA AGTGAAGATC TTGGCGCGTA CATTGGATGA GGCGACAGGC
AAGTTGTTGG ATAACAATAA GTCGCCTTCA CCACGTACTG GCGAGTTAGA TAACCGCGGT
AGTCAGTTCT ACTTGGCAAT GTATTGGGCT GAAGCATTGG CTGCTCAAAC CGAAGACAAA
GAATTGCAAG CGCACTTTGC GCCTTTGGCA AAAACTTTGA TTGAAAATGA AAAGAAAATT
GCTGAAGAGC TTAAGGCGGT GCAAGGTAAA CCGGCGGATA TCGGCGGTTA TTTTGTTGCT
GATCCTGAAA AGTGCAAGGC CGTTATGCGT CCTAGCGCAA CTTTCAATGC GGCCCTGAAA
GCGGCAAGAA TTTAA
|
|---|
| Protein sequence | MASEKSKIIY TLTDEAPLLA TCAFLPIIRT FTAPAGVEIV KSDISVAARI LAEFNDCLTP
EQQVLDNLGA LGKMTLLPDI NIIKLPNISA SVPQLLAAIK ELQSKGYKIP DFPEDPKTDE
EKSIRTRYSK CLGSSVNPVL REGNSDRRAP PAVKRYARKN PHSMGEWSQA SRTHVSHMHG
GDFYSSEKSM TMTKACDVKM DLVTKSGKTI VLKPKVSLLA GEIIDSMYMS KKALCEFYEK
EIEDAYKTGM MLSLHVKATM MKVSHPIVFG HAVKIFYKDA FEKHAKLFEE LSVNVNNGMS
SLYEKIKTLP ESKREEIIQD LHACYEHRPA LAMVDSAKGI TNLHSPSDVI VDASMPAMIC
VGGKMWGADG RLHDTKAVIP ESTFARIYQE MINFCKTHGN FDPKTMGTVP NVGLMAQQAE
EYGSHDKTFE IPEAGVARIV ADDGTVLLEQ NVEEGDIWRM CQVKDAPIRD WVKLAVNRAR
LSNTPAVFWL DEYRPHEAEL IKKVNTYLKD YDLTGVDIQI MSQTRAMRYT LERVIRGKDT
ISVTGNILRD YLTDLFPIME LGTSAKMLSI VPLMAGGGLF ETGAGGSAPK HVQQLVEENH
LRWDSLGEFL ALAVSLEDIG DKTGNQKVKI LARTLDEATG KLLDNNKSPS PRTGELDNRG
SQFYLAMYWA EALAAQTEDK ELQAHFAPLA KTLIENEKKI AEELKAVQGK PADIGGYFVA
DPEKCKAVMR PSATFNAALK AARI
|
|---|
| |