Gene Pnec_0308 details

Gene Information

• Locus tag: Pnec_0308
• Symbol: nrdR
• ID: 6184370
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polynucleobacter necessarius subsp. necessarius STIR1
• Kingdom: Bacteria
• Replicon accession: NC_010531
• Strand: +
• Start bp: 277066
• End bp: 277512
• Gene Length: 447 bp
• Protein Length: 148 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641671016
• Product: transcriptional regulator NrdR
• Protein accession: YP_001797215
• Protein GI: 171463102
• COG category: [K] Transcription
• COG ID: [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
• TIGRFAM ID: [TIGR00244] transcriptional regulator NrdR

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 0.816835
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 80
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGCGCTGCC CCTTTTGCCA TAACGAAGAT ACTCAAGTAT TAGATACGCG GGTATCAGAC 
GAAGGCGATA CCATTCGCCG TCGTCGCCGT TGCGCCAAAT GTGATAAGCG CTTTACAACC 
TATGAGCGTG TAGAGCTGGC ACTCCCCGCT ATCGTTAAGA AAAACGGTAG CCGAGTTGAA 
TACAGTCACG ATAAGTTGGC AAGTTCAATC AAGCTTGCCT TGCGTAAGCG CTCAGTCTCT 
TCAGATTCCG TAGATGAATC CATTGCTCGC ATCGAAGAAA AACTCCTCAG CTTTGGCGAA 
AAAGAGATCC CAAGCGAGCG CGTGGGCGAG TTGGTGATGC GTGAGCTCAA GCGCTTAGAT 
AAAGTGGCTT ACATTCGCTT TGCTTCGGTC TACAGAAGTT TTGCGGATAT TGAATCTTTT 
GAGAGCGCTT TAAAAGAGCT CAAATAA 

 

Protein sequence

MRCPFCHNED TQVLDTRVSD EGDTIRRRRR CAKCDKRFTT YERVELALPA IVKKNGSRVE 
YSHDKLASSI KLALRKRSVS SDSVDESIAR IEEKLLSFGE KEIPSERVGE LVMRELKRLD 
KVAYIRFASV YRSFADIESF ESALKELK