Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0306 |
Symbol | |
ID | 6184372 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 275054 |
End bp | 275710 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641671014 |
Product | protein TolQ |
Protein accession | YP_001797213 |
Protein GI | 171463100 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0811] Biopolymer transport proteins |
TIGRFAM ID | [TIGR02796] TolQ protein |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.0846201 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 81 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCTCTA CACAAGACCT CTCATTCCTC CCCCTAGTCC TCAATGCCAG CCTATTAGTA CAGTTGGTAA TATTGTTATT GCTCAGTATG TCGGTAGCCT CTTGGACCAT TATTTTCAAG AAAACCGCGG TTTTGCGCGG GGTTCGCCAA GATACTGAGC GCTTTGAACG TGATTTTTGG GCAGGCGGAG ACCTAAACAC CCTTCTGGAG GCCGCCCAGC GCAACACCCG TAGCGATGCG GTCTTGGAAC ATATTTTTGA AGCCGGCATG CAAGAGTTCA CCAAGGGTCG TGAAATTGAC GCCGCCCGCC GCGCCATGAA AGCCGCCTAC CAGCGTGAAA TGGACCTTCT AGAGGCCAAT CTACCCTTCT TGGCATCCGT AGGCTCAGTG TCCCCCTATA TTGGCCTCTT TGGCACTGTT TGGGGGATCA TGCACTCCTT CCGCGGCTTA GCCAATGTTC AGAATGCAAT CCTCTCGGCA GTAGCCCCTG GTATTGCAGA AGCACTGATT GCCACCGCAA TTGGTCTGTT TGCCGCGATT CCAGCAGTGG TTGCCTATAA CCGTGCCGCT ACTGACGTCG ATCGCCTCTC CATTCGCTTT GAAACATTCA TCGAAGAGTT CACTAATATC TTGCAGCATC AAACTGCCGG AAGATAA
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Protein sequence | MTSTQDLSFL PLVLNASLLV QLVILLLLSM SVASWTIIFK KTAVLRGVRQ DTERFERDFW AGGDLNTLLE AAQRNTRSDA VLEHIFEAGM QEFTKGREID AARRAMKAAY QREMDLLEAN LPFLASVGSV SPYIGLFGTV WGIMHSFRGL ANVQNAILSA VAPGIAEALI ATAIGLFAAI PAVVAYNRAA TDVDRLSIRF ETFIEEFTNI LQHQTAGR
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