Gene Pnec_0306 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0306 
Symbol 
ID6184372 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp275054 
End bp275710 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content52% 
IMG OID641671014 
Productprotein TolQ 
Protein accessionYP_001797213 
Protein GI171463100 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0811] Biopolymer transport proteins 
TIGRFAM ID[TIGR02796] TolQ protein 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0846201 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones81 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCTA CACAAGACCT CTCATTCCTC CCCCTAGTCC TCAATGCCAG CCTATTAGTA 
CAGTTGGTAA TATTGTTATT GCTCAGTATG TCGGTAGCCT CTTGGACCAT TATTTTCAAG
AAAACCGCGG TTTTGCGCGG GGTTCGCCAA GATACTGAGC GCTTTGAACG TGATTTTTGG
GCAGGCGGAG ACCTAAACAC CCTTCTGGAG GCCGCCCAGC GCAACACCCG TAGCGATGCG
GTCTTGGAAC ATATTTTTGA AGCCGGCATG CAAGAGTTCA CCAAGGGTCG TGAAATTGAC
GCCGCCCGCC GCGCCATGAA AGCCGCCTAC CAGCGTGAAA TGGACCTTCT AGAGGCCAAT
CTACCCTTCT TGGCATCCGT AGGCTCAGTG TCCCCCTATA TTGGCCTCTT TGGCACTGTT
TGGGGGATCA TGCACTCCTT CCGCGGCTTA GCCAATGTTC AGAATGCAAT CCTCTCGGCA
GTAGCCCCTG GTATTGCAGA AGCACTGATT GCCACCGCAA TTGGTCTGTT TGCCGCGATT
CCAGCAGTGG TTGCCTATAA CCGTGCCGCT ACTGACGTCG ATCGCCTCTC CATTCGCTTT
GAAACATTCA TCGAAGAGTT CACTAATATC TTGCAGCATC AAACTGCCGG AAGATAA
 
Protein sequence
MTSTQDLSFL PLVLNASLLV QLVILLLLSM SVASWTIIFK KTAVLRGVRQ DTERFERDFW 
AGGDLNTLLE AAQRNTRSDA VLEHIFEAGM QEFTKGREID AARRAMKAAY QREMDLLEAN
LPFLASVGSV SPYIGLFGTV WGIMHSFRGL ANVQNAILSA VAPGIAEALI ATAIGLFAAI
PAVVAYNRAA TDVDRLSIRF ETFIEEFTNI LQHQTAGR