| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0298 |
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| Symbol | |
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| ID | 6184241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 268537 |
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| End bp | 269655 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641671006 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001797205 |
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| Protein GI | 171463092 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 89 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACAGTG CAGTTGACCA CCAATTCATG AGCGAGGCTT TGTCTGAAGC TCAAAAGGCC
CTCTATCTTT CCAACCCGAA CCCACGGGTG GGATGCGTCA TTGCTAAAGA GGGGAAAATA
ATCGGGCGCG GCTTTACTCA AGCAGCTGGT AAAGCGCACG CAGAAGTGCA AGCGCTCGCA
GATGCTAAAG CACGGGGAAA TGATGCTACT GGCTCAACTA TCTACGTGAC TTTAGAGCCC
TGCAGCCATA CCGGCAAAAC ACCTCCTTGT GTGGATGCCC TCATTGCCGC TAAGCCAAGC
AAAGTCATTG TGGCAATGTC CGATCCCAAC CCACTGGTAG CGGGTCAAGG TTTAGAAAAG
TTAAAACTTG CTGGTATTGA AGTGCAATAC GGTTTAATGG AGTCAGAAGC GCAATTACTC
AACCGTGGAT TTGTTTCTAG GATGACTCGT GGCTTGCCAT GGGTGCGCAT GAAGATTGCC
GCTAGTCTAG ATGGCAAAAC TGCTTTGCCG GATGGCCGCA GTCAATGGAT TACAGGACCA
CTTGCTAGGG CCGATGGTCA TCACTGGCGT GCACAGGCAT GCGCGATTGT CACAGGAGTT
GGCACGGTTA AAGAAGATGA TCCAAGTCTG AATGTGAGAG AGGTTGAGAC TCGGAGGCAG
CCAGTTCGAA CCATCATTGA TTCCAAATTG GAAACACCAA TTAACGCGAA GATCTTAAAA
AACCCAGAGC TGTCTGACAT TTTGATCGTC TGTGCAAATT TAGATAAGTC TGAAATGCAA
GCAAAAGCGA AAGCTTTTGA AGCTCGCGGT ATTCAAGTGA TTGCGATGGC CAACGCATTT
GGTAAGGTCG ATTTACCATG CCTTTTCTCC TATCTCGCCA AAGAGCGTGA AATGAATGAG
ATTCATATCG AGGCTGGTTT TAAGCTCAAT GACTCCATGC TCAGAGAAGA CTGTATAGAT
GAATTGCTGC TCTATTACGC ACCATTTTTA ATGGGCGATG GCATTGGCAT GGCGAATGTT
AGCCTCTTAA ATGACTTAGG CCAGCGCCAG AACTGGCAGA TCATTGATCA AGCGCTTTTG
GGTTCTGATC TGCGTTTACG TTTAATTAAA AATAGTTAA
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| Protein sequence | MYSAVDHQFM SEALSEAQKA LYLSNPNPRV GCVIAKEGKI IGRGFTQAAG KAHAEVQALA
DAKARGNDAT GSTIYVTLEP CSHTGKTPPC VDALIAAKPS KVIVAMSDPN PLVAGQGLEK
LKLAGIEVQY GLMESEAQLL NRGFVSRMTR GLPWVRMKIA ASLDGKTALP DGRSQWITGP
LARADGHHWR AQACAIVTGV GTVKEDDPSL NVREVETRRQ PVRTIIDSKL ETPINAKILK
NPELSDILIV CANLDKSEMQ AKAKAFEARG IQVIAMANAF GKVDLPCLFS YLAKEREMNE
IHIEAGFKLN DSMLREDCID ELLLYYAPFL MGDGIGMANV SLLNDLGQRQ NWQIIDQALL
GSDLRLRLIK NS
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