| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0283 |
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| Symbol | |
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| ID | 6184345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 258682 |
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| End bp | 259404 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641670992 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_001797191 |
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| Protein GI | 171463078 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.421853 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 96 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCCTC CACCCAGCAA ACCAGCAGTA CCGTCAGTCT CCGCACCATC TAATTTGACT
GGCAATAAAT CAAATGAAGT TAAGGGGCAA TTAAACGATT TAATTCAGCT CTATCAAGAA
GCTGCTTTTA GTGACCCTGT ATTAACTGCT GCCCGCTTTA ATTACCAAGC AAGCAAAGAA
CTCTACTGGC AGGGCTTTTT ATTGCTGATG CCACAAGCTA ATGCCACCCC TGGTGGAACA
CGCTACTACC AACATGGTAC AGGCAGTACT CTGGTTTCAA ACAACCCAGG TAACTCAAGA
GTCTTTGATG CATTGACCAG CCAAGATCAT GTAGCGCTCT GCCAAAACAA AAAGGATTTG
ATTAAGCAAC AGCTAGAGGC TGCTCAAGCA AAATTTGATA CAGACTTAGC AACGATTGTG
GATGTCAACA CTGCTCAAGC AGCCTTAGAC TTGGCGAACT CCCAAGAGAT TGCTGCACAG
GCCGATCTGA TTGTGAAGCG CGGCGCATTG GAGCAAATTG TTGGACGCCC AGTAGGTGCA
TTAAAGCCTC TGATTAAGAA CGCTCAAATT GGAGGTGTCC TTAAAGATCC GCGGAGCAAG
AGTAAAGACA GTAAAGGCAA CCCTATTGCA GAAAATGTGA ATCCTCAACT TCCACCGGGA
CAAACGCTAG AAGACTGGAT TAATCAAGCG GAATCATCTA ACTTTAATGT CTTGGCCGGA
TAG
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| Protein sequence | MAPPPSKPAV PSVSAPSNLT GNKSNEVKGQ LNDLIQLYQE AAFSDPVLTA ARFNYQASKE
LYWQGFLLLM PQANATPGGT RYYQHGTGST LVSNNPGNSR VFDALTSQDH VALCQNKKDL
IKQQLEAAQA KFDTDLATIV DVNTAQAALD LANSQEIAAQ ADLIVKRGAL EQIVGRPVGA
LKPLIKNAQI GGVLKDPRSK SKDSKGNPIA ENVNPQLPPG QTLEDWINQA ESSNFNVLAG
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