| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0280 |
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| Symbol | |
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| ID | 6184353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 256461 |
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| End bp | 257021 |
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| Gene Length | 561 bp |
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| Protein Length | 186 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641670990 |
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| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
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| Protein accession | YP_001797189 |
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| Protein GI | 171463076 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
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| TIGRFAM ID | [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 93 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACATCTA AGTTATTGAT TACGCCTACT GCAATTCATG ATGTTTTTAT TGTGGAGCCA
AAGGTATTCG GTGATGAGCG TGGTTGGTTT ACCGAGTCAT TTAATGCAGA AGACTTTGCA
AAAGCTACTG GGCTTGATGT TCGGTTTGTA CAAGATAATC ATTCATTTTC TCGTCAATGG
ACTTTGCGTG GCTTGCATTA TCAAATGGAA AAGACTCAGG GCAAATTAGT GCGAGTCGTT
GCAGGTAGCG TATTTGATGT GGCAGTAGAT ATTCGCAAAG ATTCACCGAC ATTCGGTAAA
TGGGTGGGCG TTGAATTAAG TGCTGAGAAC CACAAGCAAT TGTGGATTCC GGCTCAATTA
GCTCATGGCT TTTTAGTCTT ATCTCCAACA GCCGAGTTCC TATATAAAAC CACCGATTAC
TACCATCCAC AGAGCGAGGC TTGCCTTGCC TGGAGTGATC CAACAGTTGG GATTGAATGG
CCATTACCTA GTGGTATTCA GCCGAATATG AATGCTAAGG ATGCGGCTGG TCATTTGTGG
GATGCGGCGC CTAAGTTCTA A
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| Protein sequence | MTSKLLITPT AIHDVFIVEP KVFGDERGWF TESFNAEDFA KATGLDVRFV QDNHSFSRQW
TLRGLHYQME KTQGKLVRVV AGSVFDVAVD IRKDSPTFGK WVGVELSAEN HKQLWIPAQL
AHGFLVLSPT AEFLYKTTDY YHPQSEACLA WSDPTVGIEW PLPSGIQPNM NAKDAAGHLW
DAAPKF
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