| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0249 |
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| Symbol | |
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| ID | 6184395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 226802 |
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| End bp | 228796 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641670959 |
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| Product | transketolase |
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| Protein accession | YP_001797158 |
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| Protein GI | 171463045 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 81 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAACC TTCAAATTCG CATGGCTAAT GCCATTCGCG CTTTATCCAT GGATGCAGTA
CAGCAGGCAA ATTCAGGCCA CCCTGGTATG CCGATGGGGA TGGCAGATAT TGCCGTAGGT
CTTTGGAACG AACATTTAAA ACATAACCCA ACGGATCCGC ATTGGATTGA TCGTGATCGT
TTTGTTTTAT CAAATGGTCA CGGTTCCATG TTGCTGTATT CACTCTTACA TCTTTCTGGT
TACGACTTGC CGATTGAAGA GTTAAAAAAT TTCCGTCAAT TACACAGCAA GACCCCAGGG
CATCCTGAGT ATGGAATTAC TCCTGGAGTA GAGACGACTA CTGGACCATT GGGTCAGGGA
ATCTCCAACG CAGTAGGTAT GGCATTGGCT GAAAAATTAC TTGCAGAAGA ATTTAACCGT
CCTGGTCACA ATATTGTTGA TCACTACACC TATGTATTTT TAGGTGATGG TTGCTTGATG
GAAGGTATTA GCCATGAAGT CTGTTCATTG GCTGGCATAC TCAAGCTCAA TAAGTTAATT
GCATTGTGGG ATGACAACGG TATATCGATT GATGGAAAGG TTGTATCTTG GTTTAATGAA
GATACACCTA AGCGCTTTGA GGCTTATGGC TGGAATGTCA TTTGTGATGT AGACGGCCAT
GATGCTGAGG CTGTATCTGC CGCTATTGCT AAAGCCAAAA AGAGCGATAA ACCAACACTC
ATTTGCTGTA AGACCGCAAT TGGCCAAGGC TCGCCAAATA TGGCTGGTAG CGACAAGGTG
CATGGTTCAC CATTGGGTGC AGCTGAGATT GCAGCAACTC GTGTTGCTTT GAATTGGCCG
TATCCACCGT TTGAAATTCC GAAAGATATT TATGCGGCAT GGGATTTTAA AAAGCGTGGT
CAAGCAGCCG AACATGAATG GAACAAAGAA TTTCAGAAAT ACAAAAATAA ATTTCCAGAA
CTTGCTTCTG AATTGCAGCG CCGCATGGAA GGTGAGTTAT CAAAAGAATT TTCATCGACC
TTAAGTACGT ATTTAAAAAC TTGCCAATCT AAGGCTGAGA CGATTGCTAC TCGTAAAGCA
AGTCAAAATG CAATTGAAGC TTTAGCTCCT GCGTTGCCAG AGTTTATGGG CGGCTCTGCT
GACTTAACGG GCTCTAACTT AACCAATTGG TCAACATGTA AAGCGGTGCG TGGCGATCAG
TGGGGCAACC ACATTAATTA TGGTGTGCGT GAATTCGGTA TGGGTGCCAT CATGAACGGT
ATCGCTCTGC ATGGCGGCTA TATTCCATTT GGCGGCACCT TCTTAACCTT CTCTGATTAC
AGCCGTAATG CCTTGCGTAT GGCTGCCTTG ATGAAGTTGC GCAGCATTTT TGTTTTTACC
CATGACTCTA TTGGTTTGGG TGAGGATGGT CCAACCCATC AGTCTGTGGA GCATGTTGCC
AGCTTGCGCC TAATTCCAAA CCTCATGGTT TGGCGTCCTT GCGATACCAC TGAGAGCGCG
GTAGCTTGGG GCTCAGCGAT TGGGCGCAAG AACGGCCCTA GCGCACTGAT CTTTAGTCGT
CAAAATTGCC CATTCGTATC TCGCACTCCT GCCCAAATTA AAGATATTGC TCGTGGCGGT
TACGTATTGC GCGATCCAAA GTCTGCAAAG ATTGATGCGG TCATTATTGC TACTGGTTCT
GAAATTGCAC TCGCATTGCA AACTGCAGAA CATCTTGAAA AAGAGGGTTT GGGGATTCGG
GTTGTTTCAA TTCCTTCGAC CACTGTTTTT GATCAGCAAG ATGCTGCGTA CAAAGCAAAA
GTATTGCCTG CCAATATTCC ACGTGTTGCT GTTGAAGCAG GCGTAAGTGA TTTCTGGTGG
AAGTATGGTT GTGCAGCAGC GCATGGTGTG GATACTTTCG GTGAATCTGC GCCAGCACTA
GTGTTGTATG AATATTTTGG TTTAACAGTT GGTCAAATTG CCAAGACTGT TAAGCAATGC
ATCTCGAAGA AGTAA
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| Protein sequence | MSNLQIRMAN AIRALSMDAV QQANSGHPGM PMGMADIAVG LWNEHLKHNP TDPHWIDRDR
FVLSNGHGSM LLYSLLHLSG YDLPIEELKN FRQLHSKTPG HPEYGITPGV ETTTGPLGQG
ISNAVGMALA EKLLAEEFNR PGHNIVDHYT YVFLGDGCLM EGISHEVCSL AGILKLNKLI
ALWDDNGISI DGKVVSWFNE DTPKRFEAYG WNVICDVDGH DAEAVSAAIA KAKKSDKPTL
ICCKTAIGQG SPNMAGSDKV HGSPLGAAEI AATRVALNWP YPPFEIPKDI YAAWDFKKRG
QAAEHEWNKE FQKYKNKFPE LASELQRRME GELSKEFSST LSTYLKTCQS KAETIATRKA
SQNAIEALAP ALPEFMGGSA DLTGSNLTNW STCKAVRGDQ WGNHINYGVR EFGMGAIMNG
IALHGGYIPF GGTFLTFSDY SRNALRMAAL MKLRSIFVFT HDSIGLGEDG PTHQSVEHVA
SLRLIPNLMV WRPCDTTESA VAWGSAIGRK NGPSALIFSR QNCPFVSRTP AQIKDIARGG
YVLRDPKSAK IDAVIIATGS EIALALQTAE HLEKEGLGIR VVSIPSTTVF DQQDAAYKAK
VLPANIPRVA VEAGVSDFWW KYGCAAAHGV DTFGESAPAL VLYEYFGLTV GQIAKTVKQC
ISKK
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