Gene Pnec_0221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0221 
Symbol 
ID6184460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp200653 
End bp201330 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content42% 
IMG OID641670933 
ProductN-acetyl-anhydromuranmyl-L-alanine amidase 
Protein accessionYP_001797132 
Protein GI171463019 
COG category[V] Defense mechanisms 
COG ID[COG3023] Negative regulator of beta-lactamase expression 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0145297 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones71 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGCAAT GTCAATATTG CAAAGTACAT CTTCCGCAAT CAGAGACGAT TCATCATGAT 
GGACATTTTT ATTGTTCGAA AGAGCATTTT CATGCCTTGG ATTCAGGGGG TTGGATTGGT
GATGCGCAAT GGCGGATTTC GCCCAATCAA GATGCCAGAC CTGAAAATGT TCATCCAGAT
TTGGTGGTGA TTCATCACAT TAGTCTTCCG CCGAGTGAAT TTAAAAAGTC CGATACCAGT
CGGTACATCG TAGATTTTTT TCAAAACAAG CTTGATCCAA GCGAGCACCC TTATTTTGCT
GAGATTGCCA ATCAAAAAGT ATCCAGCCAT TTTTTAATTA CACGCTCTGG GCAGGTACTG
CAGTTTGTAT CCACTCGGAA CAGGGCTTGG CATGCAGGTG TTTCATCGTT TTTTGATCGG
GATAAGTGCA ATGACTTTTC TATTGGAATT GAATTAGAGG GTGATGGCGA CACGATATTT
GAGGCGGCTC AATATCAAGC TTTAACAAAG CTCATTCAAA AATTGGCAAG TTCTTACCCT
GATGTGCAAT TTGCCGGACA TAGCGATATC GCTCCCGAGC GCAAAACAGA TCCTGGAATG
TATTTTGATT GGAAAAAGTT CCAAAAAGAG ACAGGAATTT CTGCCAAAAA ATTGCCTTTT
GGTTTGAACC CTCGATAA
 
Protein sequence
MVQCQYCKVH LPQSETIHHD GHFYCSKEHF HALDSGGWIG DAQWRISPNQ DARPENVHPD 
LVVIHHISLP PSEFKKSDTS RYIVDFFQNK LDPSEHPYFA EIANQKVSSH FLITRSGQVL
QFVSTRNRAW HAGVSSFFDR DKCNDFSIGI ELEGDGDTIF EAAQYQALTK LIQKLASSYP
DVQFAGHSDI APERKTDPGM YFDWKKFQKE TGISAKKLPF GLNPR