Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_0211 |
Symbol | |
ID | 6184180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 191638 |
End bp | 192642 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641670924 |
Product | Polyprenyl synthetase |
Protein accession | YP_001797123 |
Protein GI | 171463010 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 0.301992 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTAGTA CTGTCAAAAC CAATGACCTA AGCCAAATCC TGACCCCAAT TGCCTTAGAT TTCAAGGCCT TAGATGAGGT TATCCGCCAG CGTTTGGCTT CAAAAGTGGC CTTAATTGAC CAAATTTCGA CCTATATCAT CCAGGCTGGC GGCAAACGGG TTAGGCCTGC ACTCCTAATG CTGGTAGCCA AAGCACTAGC CAACGGCAAA CAAACCCCCC ATATTTTGGA AATGTCCGCT GTTGTTGAGT TCATCCACAC AGCAACCCTA CTTCATGATG ACGTAGTTGA TGAATCCACC CTAAGAAGAG GTCGTAAAAC TGCCAACGCT GCTTTTGGCA ACGCTGCCAG CGTTTTGGTG GGGGACTTCC TATATTCCAG AGCCTTCCAG ATGATGGTTG ACCCAAATGA CTTGCGAGTG ATGCAAATTC TGTCAGATGC AACCAATACG ATTGCCGAAG GTGAAGTGCT CCAACTCTTA AATATGAATG ACCCCGAGGT AGATGAAGAA AGTTACCTGC AAGTCATCCG CTACAAAACT GCCAAACTAT TTGAAGCCTC TACAGAGTTA GGCGCTATTT TGGCTAATGC CACTAATGCC CAACGCGAAC AGGCTGCGGC ATTTGGACGA CACATTGGCA CAGCTTTTCA GTTGATGGAT GATCTTCTTG ATTACACCGC CAATGCTGCA CAAATGGGTA AAAATGCTGG TGATGATTTG CGCGAAGGCA AGCCAACCTT ACCACTTATC TACTTACTAG AAAATGGCAG TAGTGAAGAG CAACTTTTAG TTCGTGCCGC AATTGAGCAA AACCAAGATT TACCAGATGA TGTGTTTGCA CAAATTCTGG CTGCAGTGCA AAACTCAGGT GCGCTTGAGT ACACACAAGC AGCGGCTAAA CGCGAAGCAG ACCTAGCCAT GTCTTATCTC AAAGACTTCC CCGCAAACCC AGCCAGTCAA GCGCTAGAGG CATTGTGCGC ATATTCTCTT ACAAGGCAAA CTTAA
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Protein sequence | MPSTVKTNDL SQILTPIALD FKALDEVIRQ RLASKVALID QISTYIIQAG GKRVRPALLM LVAKALANGK QTPHILEMSA VVEFIHTATL LHDDVVDEST LRRGRKTANA AFGNAASVLV GDFLYSRAFQ MMVDPNDLRV MQILSDATNT IAEGEVLQLL NMNDPEVDEE SYLQVIRYKT AKLFEASTEL GAILANATNA QREQAAAFGR HIGTAFQLMD DLLDYTANAA QMGKNAGDDL REGKPTLPLI YLLENGSSEE QLLVRAAIEQ NQDLPDDVFA QILAAVQNSG ALEYTQAAAK READLAMSYL KDFPANPASQ ALEALCAYSL TRQT
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