Gene Pnec_0211 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0211 
Symbol 
ID6184180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp191638 
End bp192642 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content47% 
IMG OID641670924 
ProductPolyprenyl synthetase 
Protein accessionYP_001797123 
Protein GI171463010 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0142] Geranylgeranyl pyrophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones60 
Fosmid unclonability p-value0.301992 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTAGTA CTGTCAAAAC CAATGACCTA AGCCAAATCC TGACCCCAAT TGCCTTAGAT 
TTCAAGGCCT TAGATGAGGT TATCCGCCAG CGTTTGGCTT CAAAAGTGGC CTTAATTGAC
CAAATTTCGA CCTATATCAT CCAGGCTGGC GGCAAACGGG TTAGGCCTGC ACTCCTAATG
CTGGTAGCCA AAGCACTAGC CAACGGCAAA CAAACCCCCC ATATTTTGGA AATGTCCGCT
GTTGTTGAGT TCATCCACAC AGCAACCCTA CTTCATGATG ACGTAGTTGA TGAATCCACC
CTAAGAAGAG GTCGTAAAAC TGCCAACGCT GCTTTTGGCA ACGCTGCCAG CGTTTTGGTG
GGGGACTTCC TATATTCCAG AGCCTTCCAG ATGATGGTTG ACCCAAATGA CTTGCGAGTG
ATGCAAATTC TGTCAGATGC AACCAATACG ATTGCCGAAG GTGAAGTGCT CCAACTCTTA
AATATGAATG ACCCCGAGGT AGATGAAGAA AGTTACCTGC AAGTCATCCG CTACAAAACT
GCCAAACTAT TTGAAGCCTC TACAGAGTTA GGCGCTATTT TGGCTAATGC CACTAATGCC
CAACGCGAAC AGGCTGCGGC ATTTGGACGA CACATTGGCA CAGCTTTTCA GTTGATGGAT
GATCTTCTTG ATTACACCGC CAATGCTGCA CAAATGGGTA AAAATGCTGG TGATGATTTG
CGCGAAGGCA AGCCAACCTT ACCACTTATC TACTTACTAG AAAATGGCAG TAGTGAAGAG
CAACTTTTAG TTCGTGCCGC AATTGAGCAA AACCAAGATT TACCAGATGA TGTGTTTGCA
CAAATTCTGG CTGCAGTGCA AAACTCAGGT GCGCTTGAGT ACACACAAGC AGCGGCTAAA
CGCGAAGCAG ACCTAGCCAT GTCTTATCTC AAAGACTTCC CCGCAAACCC AGCCAGTCAA
GCGCTAGAGG CATTGTGCGC ATATTCTCTT ACAAGGCAAA CTTAA
 
Protein sequence
MPSTVKTNDL SQILTPIALD FKALDEVIRQ RLASKVALID QISTYIIQAG GKRVRPALLM 
LVAKALANGK QTPHILEMSA VVEFIHTATL LHDDVVDEST LRRGRKTANA AFGNAASVLV
GDFLYSRAFQ MMVDPNDLRV MQILSDATNT IAEGEVLQLL NMNDPEVDEE SYLQVIRYKT
AKLFEASTEL GAILANATNA QREQAAAFGR HIGTAFQLMD DLLDYTANAA QMGKNAGDDL
REGKPTLPLI YLLENGSSEE QLLVRAAIEQ NQDLPDDVFA QILAAVQNSG ALEYTQAAAK
READLAMSYL KDFPANPASQ ALEALCAYSL TRQT