Gene Pnec_0203 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0203 
Symbol 
ID6184387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp184247 
End bp185536 
Gene Length1290 bp 
Protein Length429 aa 
Translation table11 
GC content45% 
IMG OID641670920 
Productprotein of unknown function DUF21 
Protein accessionYP_001797119 
Protein GI171463006 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4536] Putative Mg2+ and Co2+ transporter CorB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value0.228231 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACACCT TTTTTGACGA TTGGCCGTTT TATGGTCAAG TTGCTCTAGT CCTATTTTTA 
CTTGCACTAT CCGGCTTTTT CTCGATGGCA GAAACCAGCA TGCTGTCCTC CAACCGTCAT
CGTCTCCGCG CAATGGCCAA TGGTGGCAAT GCAGGTGCAG CCCTAGCCGA AAGACTCTTA
AAACGCATAG ATTCATTGCT ATCAGTACTG CTGATTTCCA ACAACCTAAT TAATACTGTT
TTACCGATCC TAGTAACGGG TATTGCTCTG CATATTTTTG GAGATAGCGG TCTCGTACTC
TCCATCGCCA CTTTAGTGGT TGCTCTGCTG ATTATTATTT TTAGCGAAAT TACCCCGAAA
GTTATTGGCG CGGCATTTCC AGAAAGAATC GCATCCAATG TTGGCTGGCT TATCCTGCCA
CTCACGTTTT TACTAGCCCC TTTACTCTGG TTTATTAATA GCTTTGTCTC TGGATTAATG
AAAATATCCG GCTTGCAGTC GTCCTCTGAC AGTAGAGCCA TGAGCAAGGA GGAGTTACGC
AGTCTCGTAT TGGAATCAAA TCGTTTTGTT TCCACTCACC ATCGCAATAT TCTGCTCAAC
TTGTTTAACC TCGAAAACAT CGCCGTTGAT GATGTCATAA CCCCCAGATC CAAGATTGAA
GTTTTAGATC TATCAAGACC GATTGATGAA GTTGTTCAGC AACTGGAAAC TTGCTATCAC
AATAAATTGC CAGTTTGCGA CGAAGACTCT GAACGCATAG TTGGTATCCT CTCAGTCAAA
AAAGCCTTGT CCTTGCTGGG CGATACAAAC TTGACGCATG AGGACTTCAG AGCTCTACTC
AATGAGCCCT ACTTTATTCC CAGTGGTACA CTCGTACTAC AGCAAATGCA GTTTTTTCAG
GACAATCAAC AGCGCTTGAG TTTGGTTGTA AATGAATATG GCGAAGTGTT AGGACTAGTT
ACTTTTGAAG ATATCGTTGA AGAGCTAATT GGTGAATTCA CCACCTCGTT CTCAAATCTT
TCAACCGACC CCCATTGGCT TGCCGATGGC ACCTATCTTG CAAGTGGTGG CGCCTCACTG
AGAGACCTCA ATCGCTTGCT CAGCCTCAAC CTTCCGCTGG ATGGGCCGCG CACATTAAAT
GGTCTCATTC TTGAAAGGCT GGAAGCCATC CCAGATCATG ATGTCAGCAT TCGAATTGCT
GGCGTCGTCA TGGAAATCGT GCAGTTTGAT GAACATGGCG TGAAAACAGT AAAACTCTAT
CGCCCCACCC CAGCTCAAGA GCAAGATTGA
 
Protein sequence
MDTFFDDWPF YGQVALVLFL LALSGFFSMA ETSMLSSNRH RLRAMANGGN AGAALAERLL 
KRIDSLLSVL LISNNLINTV LPILVTGIAL HIFGDSGLVL SIATLVVALL IIIFSEITPK
VIGAAFPERI ASNVGWLILP LTFLLAPLLW FINSFVSGLM KISGLQSSSD SRAMSKEELR
SLVLESNRFV STHHRNILLN LFNLENIAVD DVITPRSKIE VLDLSRPIDE VVQQLETCYH
NKLPVCDEDS ERIVGILSVK KALSLLGDTN LTHEDFRALL NEPYFIPSGT LVLQQMQFFQ
DNQQRLSLVV NEYGEVLGLV TFEDIVEELI GEFTTSFSNL STDPHWLADG TYLASGGASL
RDLNRLLSLN LPLDGPRTLN GLILERLEAI PDHDVSIRIA GVVMEIVQFD EHGVKTVKLY
RPTPAQEQD