| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0190 |
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| Symbol | |
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| ID | 6184215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 171159 |
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| End bp | 173924 |
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| Gene Length | 2766 bp |
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| Protein Length | 921 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641670910 |
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| Product | preprotein translocase, SecA subunit |
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| Protein accession | YP_001797109 |
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| Protein GI | 171462996 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
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| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.893566 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 0.461403 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAATCG GTCTTCTTAA AACCCTGGTC GGCAGTCGAA ACGACCGCCT CTTAAAACAG
TATCGCAAAG TCATTGCCAA GGTCTCCGCT TTTGAGCCGA GCCTGCAATC TTTGGATGAT
GTTGCTCTTG CTACAAAAAC TGCAGAATTC AAATTACGCC TGGCAGCGGG AGAGTCGTTG
GACGATATCG CCGCCGAAGC ATTTGCGGTT GTTCGCGAAG CCAGCGTACG CGTCATGAAA
ATGCGTCATT TTGATGCTCA GATTATGGGT GGCTTGGCTT TACATCAAGG CAAGATTGCT
GAGATGGGCA CTGGCGAAGG AAAAACCTTA ACTGCCACTT TGCCGGTCTA CTTAAATGCA
TTGACTGGTA AGGGTGTTCA CGTTGTAACC GTTAACGATT ATTTGGCTCA ACGCGATGCC
GAATGGATGT CTAAGTTATA TAACTTCTTG GGCATGAAGG TGGGTGTGAA TTTATCCCAA
ATGGATCACA CCACAAAACA AGCGGCTTAC GCTGCAGATA TTACTTATGG CACTAATAAC
GAATTTGGTT TCGATTATTT GCGCGACAAC ATGGTTCAAG ATTTGGATCA ACGAGTACAG
CGTGGCTTAG CTTATGCGAT CGTTGACGAA GTCGACTCGA TTCTGATTGA TGAGGCTCGT
ACTCCATTAA TCATCTCAGG TCAGGCTGAG GATCACACCG ATCTCTACAT CAAGATTAAT
GCACTCCCAT CTCACCTAGA GCGACAGATT GGTGAAGAGA AGGCTGATGG TACTGGTGTT
GAAAAGCCCG GTGATTATTG GGTGGACGAG AAGTCGCAGC AGGTATATCT GACCGAGCGA
GGTCATGATA AAGCTGAGGC TGTATTGGTT CAGTTGGGCG CACTCAATGA TGGTGACTCC
CTGTATGCGC CACAAAATAT TACTTTGATG CATCACGTGT TTGCGGCTTT GCGAGCGCAT
ACCTTGTATC TTCGTGATCA GCACTATGTT GTTCAGAATG GTGAGGTAAT CATCGTTGAT
GAATTCACTG GCCGTTTGAT GCAAGGTCGT CGTTGGTCGG ATGGATTACA TCAAGCCGTA
GAAGCTAAAG AAGGCGTACA GATTCAAAAT GAGAATCAAA CTTTAGCTAC GATCACATTT
CAAAATTATT TCCGTATGTA TGGCAAGTTA GCTGGCATGA CCGGTACTGC CGATACTGAG
GCTTATGAGT TTAAGGAAAT CTACAATCTA GAAACGGTTG TGATTCCTCC TAACCGTATT
AGCCAAAGAA AAGATAAGCA AGATCAAATT TTTAAGTCTT CTCGTGAGCG CTATGACGCA
GTTATAAAAG ACATAGAAGA TTGCTATGAA CGTGGCCAGC CAGTTTTGGT GGGAACCACC
TCAATTGAGA ACTCTGAGTT GATTGCGCAA TTATTGGATA AACGTAAGCT GCCACATCAA
GTATTGAATG CTAAGCAGCA TGCTCGTGAA GCGGAAATTA TTGCGCAAGC AGGTCGTCCA
AAAATGATCA CCATTGCTAC TAATATGGCA GGTCGCGGTA CCGACATTGT TTTGGGCGGT
AATGTGGGTA AGCAATCTTC CTTGATTGAT GCGGATAGCT CACTTTCTGA TGCTGAAAAA
GCAAGCAAGA TTATGCAATT GCAGGACGAG TGGCAAAGTA TTCATGATCA AGTTCTCGCA
TCAGGTGGAT TGCATATCAT CGGCACTGAA CGTCATGAGA GCCGTCGTAT CGATAACCAA
TTAAGAGGTC GCTCTGGCCG TCAGGGCGAT CCCGGCTCCT CCCGTTTCTA TCTTTCATTA
GATGATCCGC TTTTGCGTAT CTTTGCTGGT GATCGTTTGC GCGCTGTCAT GGAGCGCTTG
AAGATGCCGG ATGGTGAGCC GATTGAAGCT GGCATAGTCA CTCGTTCGAT TGAGTCTGCA
CAGCGCAAAG TTGAAGGACG TAACTTTGAT ATCCGTAAGC AGTTGCTTGA GTATGACGAC
GTTGCAAATG ATCAGCGTAA GGAAACCTAT CGCCTTAGAA ATGAAGTTCT TGAGAGTAGT
GATATTGGCG ACTTGATTGC TAATTTACGA GAAGACGTAT TGCGAGCTGT ATGTTCGGTT
TATGTGCCTC TTGAGTCCAT GGAAGAGCAA TGGGATCTCG CTGGCCTAGA AAATGTTTTA
GCTAGCGAGT GGGGCCTTAC GATTGTCCTA AAGAATTGGG TTGAGGGCGC TGATTCCGTC
GATGATTCGG AAATTGTTGA TCGCGTATTA CAGCTTGCCA AAGAGTCTTA TGATGCCAAA
GTGGATCTAT CTGGCCGGGA ATCATTTGCC AGCTTTGAGC GCTCAGTATT GCTCTACAGC
TTGGACAGCC ATTGGCGTGA GCATTTGGCA GCATTGGATT ATTTGCGCCA AGGTATTCAT
TTGCGTGGCT ATGCTCAGAA AGATCCAAAG CAAGAATATC GTCGCGAAGC ATTTGAGCTT
TATGGTGAAC TGCTCAACGT AATTAAGAAT GACGTTGTAA AGAGCATCAT GACTGTTCAG
ATTCGTAGTG CTAGCGAGTT AGATCAAGCA TCCGAATCAA TGAATGATGA TTTGGCTAAG
CTAGCCGATG TTCAGTATCA ACATGCTGAT CCGGACATGG AAGTGGCTGG CTCAACAGGT
GATCGCGGTG CCGCAATTGA CATCCAGCCA GCGCCACTTT GCGCTGGCCC AAAGGTGGGT
CGCAATGATC CTTGTCCCTG CGGTAGTGGC AAGAAATATA AAAATTGTTG CGGTGCGTTA
ACTTAG
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| Protein sequence | MVIGLLKTLV GSRNDRLLKQ YRKVIAKVSA FEPSLQSLDD VALATKTAEF KLRLAAGESL
DDIAAEAFAV VREASVRVMK MRHFDAQIMG GLALHQGKIA EMGTGEGKTL TATLPVYLNA
LTGKGVHVVT VNDYLAQRDA EWMSKLYNFL GMKVGVNLSQ MDHTTKQAAY AADITYGTNN
EFGFDYLRDN MVQDLDQRVQ RGLAYAIVDE VDSILIDEAR TPLIISGQAE DHTDLYIKIN
ALPSHLERQI GEEKADGTGV EKPGDYWVDE KSQQVYLTER GHDKAEAVLV QLGALNDGDS
LYAPQNITLM HHVFAALRAH TLYLRDQHYV VQNGEVIIVD EFTGRLMQGR RWSDGLHQAV
EAKEGVQIQN ENQTLATITF QNYFRMYGKL AGMTGTADTE AYEFKEIYNL ETVVIPPNRI
SQRKDKQDQI FKSSRERYDA VIKDIEDCYE RGQPVLVGTT SIENSELIAQ LLDKRKLPHQ
VLNAKQHARE AEIIAQAGRP KMITIATNMA GRGTDIVLGG NVGKQSSLID ADSSLSDAEK
ASKIMQLQDE WQSIHDQVLA SGGLHIIGTE RHESRRIDNQ LRGRSGRQGD PGSSRFYLSL
DDPLLRIFAG DRLRAVMERL KMPDGEPIEA GIVTRSIESA QRKVEGRNFD IRKQLLEYDD
VANDQRKETY RLRNEVLESS DIGDLIANLR EDVLRAVCSV YVPLESMEEQ WDLAGLENVL
ASEWGLTIVL KNWVEGADSV DDSEIVDRVL QLAKESYDAK VDLSGRESFA SFERSVLLYS
LDSHWREHLA ALDYLRQGIH LRGYAQKDPK QEYRREAFEL YGELLNVIKN DVVKSIMTVQ
IRSASELDQA SESMNDDLAK LADVQYQHAD PDMEVAGSTG DRGAAIDIQP APLCAGPKVG
RNDPCPCGSG KKYKNCCGAL T
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