| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0154 |
|---|
| Symbol | |
|---|
| ID | 6184300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 135609 |
|---|
| End bp | 136883 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641670878 |
|---|
| Product | Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
|---|
| Protein accession | YP_001797077 |
|---|
| Protein GI | 171462964 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.678663 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 0.5182 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAG TTCACTCAAA TTTCCCGTCT AAATCCCTAA GCCACTCTGC CCAAACCCGC
GCGGTAGATG TTGTTGTGGT CGGCGGAGGC ATTGCTGGTA AGGCTTGCGC CCTAGGTCTA
GCCCAGCTTG GCCTCCAAAC CATAGAAATT GCTCCTGATT TGACGCAAAA CGTACCAAGC
CCACAAGGCA GCCAATGGGG ACAAAAAATT TACGCTTTTT CCCCGAGCAC CCAAAAATTA
CTAACCCATT TACAAATTTG GGATGCTATT GATCACAGTC GCTTACAGCC AGTCCGGGAT
ATGCGCATTT ATGGTGATCG CGGCGAAAAA AATGACCAAC TTCATCTTTC TGCATTCGAG
GCTGGTACAC AGCAACTCGC ATGGATTGGA GAATCTAATT TAATTGAACA CACTATTGAC
CAAGCATCAC GCTTTCAAAG TAAGCTGGAA CGCATTAATG ATACTGTAGA TAAGATTCAA
GTAGATGCTG ATGGAAGCAC TCTCCACTTA ATAAATGGTG GCAGCGTTCG TGCGCAACTG
GTAATTGCAG CCGATGGCGC CAACTCTCCG ATTCGCAATG AACTTGGCAT TGGCGCGAGC
GAAGAAAGCT ACTCTCAAAG TGCAGTGGTT GCAAATTGGC TATGCACTTA TCCACATTTA
GAAACGGCCT TTCAGTGGTT CTTGCCAGGT GGCGACATTA TTGCCATGCT GCCGTTACCA
GGAAAACAAG TCTCCATGGT TTGGTCCACA TCCCCGGAAC AAGCAGTCGA TTTATTAAAA
CTAGATCAAG CGCAATGGTT AGACCAATTT GCCTCTATTG CCAATGGCGT AATTACTAAA
CAGCTTGGCG AACTCACACT TAACTCAATA CCGGCCGCCT TCCCGTTGCG AAAAATTCGC
GCAAAGCGCT TCATTGGTCC AGAAGCATCA CCCAAAGTTG CTTTAATTGG TGATGCAGCA
CATGTCATGC ATCCACTTGC TGGACAAGGT CTAAATTTGG GCTTACGTGA TGTTGCTGTT
CTACTCAATA TCTTGGGCAA GCGGGAATCC TTCCGCCCCC CAAGTGACGT GGTGTTACTG
CGCCGCTATG AACGACAACG TCAAGGCGAT ACTAGCGCCC TTTTATGGGT CACCGATAAA
CTCAAGAAAT TATTCTCGGC TAGCAGCAAT ACAGAACGAC AGCTTCGGAA CTGGGGCTTA
GGCCTTGTGA ATAAAAGTCA CTTTATAAAA CAACGCTTAA TTGAACGCGC TTTGGGAGAA
ATTGATTTTG AATAA
|
|---|
| Protein sequence | MSEVHSNFPS KSLSHSAQTR AVDVVVVGGG IAGKACALGL AQLGLQTIEI APDLTQNVPS
PQGSQWGQKI YAFSPSTQKL LTHLQIWDAI DHSRLQPVRD MRIYGDRGEK NDQLHLSAFE
AGTQQLAWIG ESNLIEHTID QASRFQSKLE RINDTVDKIQ VDADGSTLHL INGGSVRAQL
VIAADGANSP IRNELGIGAS EESYSQSAVV ANWLCTYPHL ETAFQWFLPG GDIIAMLPLP
GKQVSMVWST SPEQAVDLLK LDQAQWLDQF ASIANGVITK QLGELTLNSI PAAFPLRKIR
AKRFIGPEAS PKVALIGDAA HVMHPLAGQG LNLGLRDVAV LLNILGKRES FRPPSDVVLL
RRYERQRQGD TSALLWVTDK LKKLFSASSN TERQLRNWGL GLVNKSHFIK QRLIERALGE
IDFE
|
|---|
| |