| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0152 |
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| Symbol | |
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| ID | 6183107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 133113 |
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| End bp | 134894 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641670876 |
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| Product | peptidase M61 domain protein |
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| Protein accession | YP_001797075 |
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| Protein GI | 171462962 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 0.125794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCACG CCGACTTACC TGCAATCCAA TATACGGTCT GGCCGGCTGA TCTTCATGGC
CATCATTTTC GCGTCAAACT ATATATTGCT CACCCTGACC CCAATGGTCA GATACTGCAA
GTGCCAGCCT GGATGCCGGG CAGTTATTTA ATTCGGGATT TTAGTAAGCA TATAGAGTCA
CTTGAAGCCT TTGCAGTGAG CGGCACCAGG AAAAAACTTG CACTCGAACG TATCGATAAC
GACCATTGGC GCCTGCCGTC AGTAGACGGC CCTATAGGGG TGTTGACCAC TATTTATGCT
TTTGACTCTT CGGTACATGC AGCCTATCTC GATACTGAGC GGGCTTTTTT CAATGCAACC
AGTCTATGCC TTGCGGCCAA AGGACAAGAG CAGTTACCCT GCTCTCTCGC TATCACTGCG
CCCGAAGTGG CTTTTGCTGA TCACTGGACG GTGCAAACTA CTTTAAGGTC AATCAAGACT
GACATGCGTG GATTTGGGTT TTATTTGGCA AAGAGCTATG ACGATTTACT AGATCATCCT
GTCGCCATGG GCGAATTTCA AACGGTGAAC TGGAAATCAA ACGGTGTAGC CCACCGCATG
GCTATTCAGG GATGCAATCA CATCGTTGAC TGCAAGCGAC TTGCTAATGA TCTTCAGGCA
ATCTGCAACA GCACCATTGA ATTATTTGAA CCCAAAACCA AACGCCCCCC ATTTGGAGAA
TATCTATTCT TGGTTAACGC CGTATTGAAT GGTTATGGCG GCCTAGAGCA TCGGAATAGC
ACTACATTAC TATGCCGCCG AAATCAAATT CCCCAAGAAA ACATTCTCTT TGATGAATCT
GCTTATAGAG AATTTTTAGG CTTATGCAGT CATGAGTATT TCCATGCGTG GTTAGTTAAA
CGCATTCAGC CAAAAGCATT TCAACCGTAT GATCTGGCCA AACGAAATCA CACTCGCTTA
CTCTGGATAT TTGAGGGCTT CACCAGCTAT TACAATGACT TGCAGCTTTT TCGCAGCAAA
CGAATTGATT TAAAAACGTA TCTAAGACTT GTATCGGATA ACTGGAATGG CATCTTGTGC
GGCCCTGGAC GCCAAAAGCA AAGCCTTGTT GATAGTTCGT TTGATGCCTG GACCAAGTAT
TACCAAGCAG ATGAAAACAC TCCCAATGCA GTCGTGAGCT ACTACGGCAA GGGTGCATTG
CTAGCCCTTG GCCTTGATTT GCAAATTCGC GCATTCACTA AAAATAAACA GTCTCTAGAT
GACCTTATGC GCCTCATTTG GCGAAAGCAT GGTATCACTC TTGATGGCAT TGCAGAAGAT
GGTTTAGATA ACTTACTCAT CAAATTACTA GGCGAAGGTT TCAGCAAAAT CTGGAACGAT
ATAAAAACAC GTTACATTTT TGGCATTGAA GATATTCCGT TGCAAAAATG GATTGAGTCA
AATCTCATCG CTGTTAAACA AAAGTCCCGA TCAACGTTGG AAAAACTCAA ACTGCAATTT
GGAATGCGAC ATACAGATGT GAATGGTTGG CTCAAAGTTA CCCATGTGCT CGATGGTGGG
ATTGCTCAGG CAGCAGGCCT GGCCGCTGGA GATTTACTAG GCAGCATAGA TGGGCAACGG
GTCACTAGTG CACGCTGGGA CAGAGTCTTG GGCAGCCTTT CTGAAAACAC TCATGTCCGC
CTCACTTTTT ATCGAAGTGA TCTTGAGTAC GAGCGCATGG CATCAATGCA TCCATCCCAA
GTGCCTGCGC AATATGAACT AACGCCGAAG AAAGATGCTT AA
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| Protein sequence | MNHADLPAIQ YTVWPADLHG HHFRVKLYIA HPDPNGQILQ VPAWMPGSYL IRDFSKHIES
LEAFAVSGTR KKLALERIDN DHWRLPSVDG PIGVLTTIYA FDSSVHAAYL DTERAFFNAT
SLCLAAKGQE QLPCSLAITA PEVAFADHWT VQTTLRSIKT DMRGFGFYLA KSYDDLLDHP
VAMGEFQTVN WKSNGVAHRM AIQGCNHIVD CKRLANDLQA ICNSTIELFE PKTKRPPFGE
YLFLVNAVLN GYGGLEHRNS TTLLCRRNQI PQENILFDES AYREFLGLCS HEYFHAWLVK
RIQPKAFQPY DLAKRNHTRL LWIFEGFTSY YNDLQLFRSK RIDLKTYLRL VSDNWNGILC
GPGRQKQSLV DSSFDAWTKY YQADENTPNA VVSYYGKGAL LALGLDLQIR AFTKNKQSLD
DLMRLIWRKH GITLDGIAED GLDNLLIKLL GEGFSKIWND IKTRYIFGIE DIPLQKWIES
NLIAVKQKSR STLEKLKLQF GMRHTDVNGW LKVTHVLDGG IAQAAGLAAG DLLGSIDGQR
VTSARWDRVL GSLSENTHVR LTFYRSDLEY ERMASMHPSQ VPAQYELTPK KDA
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