| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0134 |
|---|
| Symbol | |
|---|
| ID | 6183067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 117553 |
|---|
| End bp | 117975 |
|---|
| Gene Length | 423 bp |
|---|
| Protein Length | 140 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641670859 |
|---|
| Product | large conductance mechanosensitive channel protein |
|---|
| Protein accession | YP_001797059 |
|---|
| Protein GI | 171462946 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1970] Large-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | [TIGR00220] large conductance mechanosensitive channel protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 59 |
|---|
| Fosmid unclonability p-value | 0.172297 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTTT TAAAAGAGTT TCGGGACTTT GCCGTAAAAG GCAATGTGAT CGACTTGGCC
GTCGGTGTCA TTATTGGCGG CGCTTTTGGG AAAATCGTGG ATTCCCTGGT AAATGACATC
GTTATGCCCG TTATTTCAAC TCTTTTGGAG GGTCATATCG ACTTTACGAA CCTTTTTATC
GTTTTGGGCC ATGTCCCCGA GGGCGTTCCC AGGACATTTG ATGCCCTCAA AAAGGCTGGT
GTGCCGATTT TTGCCTACGG CAATTTCATC ACTATCTCCA TTAATTTTGT GCTTTTAGCT
TTTGTCATCT TCCAAATGGT CAAAGTAGTG AATAAGGTTC GCCTGATGGA TGCACCTCCT
CCACCACCAG CCCCAGAGGA TGTGATCCTG CTTCGCGAGA TTCGCGACAG TCTTAAAAAA
TAA
|
|---|
| Protein sequence | MSVLKEFRDF AVKGNVIDLA VGVIIGGAFG KIVDSLVNDI VMPVISTLLE GHIDFTNLFI
VLGHVPEGVP RTFDALKKAG VPIFAYGNFI TISINFVLLA FVIFQMVKVV NKVRLMDAPP
PPPAPEDVIL LREIRDSLKK
|
|---|
| |