| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0119 |
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| Symbol | |
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| ID | 6184039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 107756 |
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| End bp | 109000 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641670852 |
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| Product | porin Gram-negative type |
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| Protein accession | YP_001797052 |
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| Protein GI | 171462939 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 0.165551 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT CGCTATTAGC AGTTGCAGCT ATCGGTGCAT TTGCATCTGC TGCTCAAGCT
CAGTCCAGCG TAACCGTTTA CGGTATCTTG GACGTTGGTT ATGTTGGTTA CAACACACGT
GTTGCTAACG GTACAGTAGT TAATAAGACA ACTGGTAACT CTTTCTCAAC ATCAGCTGAA
TCCACTTCAC GTTTGGGCTT CAAAGGTACT GAAGATTTAG GCGGCGGCAA CTCTGCATTC
TTCACTGTTG AACTCGGTCT CACACCTAAC GGCCAACAAG CTGTTAACAC TGCTGGTACA
CAAAACCGTC AAGCTTTCGT TGGTTTGAAG CGTAATGGCG TTGGCCAATT CGCATTGGGT
ACGCAGTACA CTACTGTTCA CAGCGCTGTT GCTGTAACTG ATCCAGGCAA TGCAAACAAC
ATCGCTGGTA ACCTCGTTTA CCCAGCAATC ACTGAAGGCA CTGGTTCTAC AGAGAACTCA
ACTGGTGCAG CTTACACAGT TCGTACAAAC AACCAATTGT CTTTGAACAG CGCTACATTT
GCTGGTTTCC AAGCTAATGG TATGTTGGTA ATGAACAACA AGAACCAAAA CGAAACTATT
ACTGTTGCTG GTAACACAAC AACTTCAACT AGTGGTTTGA ACAACCAAAA CGGTTGGGGC
TTGGGCTTGA ACTACACATT GAACAAGTTC TACGCTACTG CTAACTACCA GGCTTTGACT
TCAAAGCAGT CTACACAGAC TACCGTTGCT AACGCTACAA CATGGTCAAC ATTTATCCCT
GTTGGCTCTC CTGCTGCTGG TTATGCAGGC GGTTCATTTG CTCCTGGTAC TAACGTACAA
GACAATCAAT GGTATGTTGC TGCTACTTAT GACTTCGGCA TCTTGAAGGC ATACGCACAG
TACATCAACC GTAAGGTTTC TGCACAACAA ACTAACAGCT ACTACTTGAG CCGTTCTGCT
GAGCAGATTG GTGTTCGTAG CTTCATTACT CCAACTGTTG AAGCTTGGGC ATCTGGTGGT
TTGGGACGTT ACACAGGTTT TGGTTCCAAT GCAGCTAACT TGACAGCATG GCAAATTGGT
TCTAACTACT GGTTGAGCAA GCGTACTAAC TTGTACGCTA TCTACGGTAT GACAGGTACT
TCAAACGTAT CTACACCTAC AACCATTGGT GGATCTGCTG CTAACATCAA CCCAGTTTCT
ACAAACGTAA GCAACTACGC TGTTGGCGTA CGTCACACTT TCTAA
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| Protein sequence | MKKSLLAVAA IGAFASAAQA QSSVTVYGIL DVGYVGYNTR VANGTVVNKT TGNSFSTSAE
STSRLGFKGT EDLGGGNSAF FTVELGLTPN GQQAVNTAGT QNRQAFVGLK RNGVGQFALG
TQYTTVHSAV AVTDPGNANN IAGNLVYPAI TEGTGSTENS TGAAYTVRTN NQLSLNSATF
AGFQANGMLV MNNKNQNETI TVAGNTTTST SGLNNQNGWG LGLNYTLNKF YATANYQALT
SKQSTQTTVA NATTWSTFIP VGSPAAGYAG GSFAPGTNVQ DNQWYVAATY DFGILKAYAQ
YINRKVSAQQ TNSYYLSRSA EQIGVRSFIT PTVEAWASGG LGRYTGFGSN AANLTAWQIG
SNYWLSKRTN LYAIYGMTGT SNVSTPTTIG GSAANINPVS TNVSNYAVGV RHTF
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