| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0114 |
|---|
| Symbol | |
|---|
| ID | 6184405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 104164 |
|---|
| End bp | 104520 |
|---|
| Gene Length | 357 bp |
|---|
| Protein Length | 118 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641670847 |
|---|
| Product | histidine triad (HIT) protein |
|---|
| Protein accession | YP_001797047 |
|---|
| Protein GI | 171462934 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0537] Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 0.588247 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACACG ACCCTAATTG CCTGTTTTGC AAGATTTCTC AAGGTTTGAT CCCCTCCCAG
AAGGTCTATG AGGATGAGGA AATCTATGCT TTTAAAGATA TCAACCCTGC AGCGCCAATA
CATTTTTTGA TGATTCCTAA AAAGCACATA CCCATGCTGG AGTCTGCAGA AAGCGTAGAT
ATCCCTTTGC TGGGTAGAAT GATGGAATTA GTGCCCCATC TTGCCAAAGA GCAGGGCTGT
TGTCCAGGTA AGGATGGTGG CTTTAGGTTG ATGGTGAACA ATGGTGCGGA TGGTGGGCAG
GAGGTTTATC ACTTGCACTT ACATGTGATG GGCAGTCCCC GCCCCTGGAA AAAATAA
|
|---|
| Protein sequence | MPHDPNCLFC KISQGLIPSQ KVYEDEEIYA FKDINPAAPI HFLMIPKKHI PMLESAESVD
IPLLGRMMEL VPHLAKEQGC CPGKDGGFRL MVNNGADGGQ EVYHLHLHVM GSPRPWKK
|
|---|
| |