| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0095 |
|---|
| Symbol | |
|---|
| ID | 6184261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 90561 |
|---|
| End bp | 91412 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641670831 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001797031 |
|---|
| Protein GI | 171462918 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1127] ABC-type transport system involved in resistance to organic solvents, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.000937702 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 66 |
|---|
| Fosmid unclonability p-value | 0.953414 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGTA GCCAGCCAAA CTCCTTGGAT GTAAACAAGC AAGCAGCAGG CGAAGTTGTC
GTCTCAATTA AAGACGTCAA CTTTTCCTAT GCTCTAGGTG AGCGGCAAAT TTTATCGGGA
CTCAATATGG AGTTTCGACG CGGTCAAGTA GTCGCAGTAA TGGGTGGCTC GGGTTGCGGC
AAGACCACAA TCCTTCGTTT GATCGGCGGT CAATATGCCG CCCAATCAGG GCAAGTCCTA
TTTGAAGGCA AAGACATCGG CAAGATGAGT GGCGCCGAGT TGATGGCTGC TCGTCGACGG
ATGGGCATGT TATTTCAGTT TGGTGCTTTG TTCACCGACC TTAGTGTTTT CGAAAATGTT
GCCTTTCCCT TGCGCGAACA CACCGACTTA AGCGAAGAGT TATTGCATTC ATTAGTGTTA
ATGAAACTCA ATGCGGTTGG TTTACGTAGT GCGCGCGATT TAATGCCTTC GCAAATTTCC
GGTGGTATGG CAAGACGGGT TGCTCTTGCT AGAGCGATAG CTCTTGATCC GCCGCTCATC
ATGTATGACG AGCCATTTGC TGGCCTTGAT CCCATTTCGC TGGGTATTGC TGCTCGCCTG
ATTCGCGATC TTAATAATGC CCTGGGAGCC ACGAGTTTAC TGGTGACGCA TGATGTTGAG
GAGACTTTTG CGATTGCCGA TTATGTGTAC TTTATTGCGA ACGGTCGCAT TGGCGCGGAA
GGAACTCCTG AAGAGTTAAG TCGTTCAACC GATCCTTTCG TTAGACAATT TTTGGATGCA
GCCCCTGATG GCCCTGTGCC GTTCCACTAT CCAGGTAAAA GTTTGGAAGA AGATTTTGGG
GTGAGATCTT GA
|
|---|
| Protein sequence | MNSSQPNSLD VNKQAAGEVV VSIKDVNFSY ALGERQILSG LNMEFRRGQV VAVMGGSGCG
KTTILRLIGG QYAAQSGQVL FEGKDIGKMS GAELMAARRR MGMLFQFGAL FTDLSVFENV
AFPLREHTDL SEELLHSLVL MKLNAVGLRS ARDLMPSQIS GGMARRVALA RAIALDPPLI
MYDEPFAGLD PISLGIAARL IRDLNNALGA TSLLVTHDVE ETFAIADYVY FIANGRIGAE
GTPEELSRST DPFVRQFLDA APDGPVPFHY PGKSLEEDFG VRS
|
|---|
| |