Gene Pnec_0085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0085 
Symbol 
ID6183293 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand- 
Start bp78449 
End bp79534 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content43% 
IMG OID641670827 
Product3-dehydroquinate synthase 
Protein accessionYP_001797027 
Protein GI171462914 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value0.00165571 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATGAAAA CACTTGAGGT TGATCTTGGT AATCGCAGTT ATCCAATATA TATTGGTACT 
GATCTCATTG ATCAGCCAAA TCTATTTAGC GCTAGCGAAA AAGCAAGCTC TATCTATATC 
GTCAGCAATA CAACCGTTGC ACCGCTCTAT GCTGAGCGCC TGACCAAGTC TCTCGCTACT 
TTTGGTAAGA ATGTTAAAAC AATTGTGCTG CCTGATGGTG AGTCTTATAA AGATTGGAAA 
AACCTTCAAC TCGTTTTTGA TGATCTTTTG AAGTTTGGTG CTGACCGCCA AACAATGTTG 
ATTGCTTTAG GTGGCGGAGT TATTGGCGAT ATGACTGGAT TTGCTGCAGC CAGCTTTATG 
CGCGGCATTC GCTTTATTCA AGTACCGACA ACCTTGCTTG CTCAGGTGGA TTCTTCCGTT 
GGTGGCAAGA CTGGCATCAA TCACCCGCTT GGCAAAAATA TGATTGGCGC CTTTCATCAG 
CCTGCTGCTG TGATTGCAGA TCTAAATACA TTAAAGACTT TGCCTCCTAG AGAGCTCTCT 
GCTGGTCTTG CAGAAGTTGT TAAACATGGT GCTATTGCTG ATGCCCAATT TTTAGATTGG 
ATTGAGGCTA ATGCAAAGAC ATTATTAGCT TGTGAAACTG AAGCTATGGG TCATGCGGTT 
TTACGTTCGT GCGAGATTAA ATCTGCAGTG GTATCTGCAG ATGAAAGAGA AGGTGGTATT 
CGCGCAACCC TAAACTTTGG TCATACCTTT GGACATGCAA TTGAAGCAGG CATGGGTTAT 
GGCGAATGGC TGCATGGAGA AGCTGTTGGG TGCGGCATGG TCTTGGGAGC AGATTTATCA 
CAACGACTCA ATTACATCAG CGAAGCCGAT GTCCAACGCC TCACCAAAAT TATTCAATCC 
ATGAACTTAC CCATTACACC ACCAAAGTTT GGTACAGAAC GCTACATGGA ATTGATGCAA 
GTGGATAAAA AAACTGAGGG TGGGCAAATC CGCTACGTTA TTTTAGAAAA GATCGGTAAA 
GCCCAAATTA AAAGCGTACC TGATGCACAA GTGATTGAAA CCTTGAATGC TACTGGCGCA 
GCTTAA
 
Protein sequence
MMKTLEVDLG NRSYPIYIGT DLIDQPNLFS ASEKASSIYI VSNTTVAPLY AERLTKSLAT 
FGKNVKTIVL PDGESYKDWK NLQLVFDDLL KFGADRQTML IALGGGVIGD MTGFAAASFM 
RGIRFIQVPT TLLAQVDSSV GGKTGINHPL GKNMIGAFHQ PAAVIADLNT LKTLPPRELS 
AGLAEVVKHG AIADAQFLDW IEANAKTLLA CETEAMGHAV LRSCEIKSAV VSADEREGGI 
RATLNFGHTF GHAIEAGMGY GEWLHGEAVG CGMVLGADLS QRLNYISEAD VQRLTKIIQS 
MNLPITPPKF GTERYMELMQ VDKKTEGGQI RYVILEKIGK AQIKSVPDAQ VIETLNATGA 
A