Gene Pnec_0078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0078 
Symbol 
ID6183304 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp71905 
End bp72255 
Gene Length351 bp 
Protein Length116 aa 
Translation table11 
GC content44% 
IMG OID641670820 
ProductCutA1 divalent ion tolerance protein 
Protein accessionYP_001797020 
Protein GI171462907 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1324] Uncharacterized protein involved in tolerance to divalent cations 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.00000144851 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCTGAAA TCCTTCCAGT CAATTCCAGC AAGCTTTTGG TGGTCGTTAC CAGTCTTCCT 
AATGTAGAGG CGGGCAAGGA TTTAGCTCGT GCTTTGGTGG AGCAGAATAT TGCAGCCTGC
GTGCAATTGA CCAATGGAAT TGAATCGATT TATCGCTGGG AAGGCAAGAT TTGCGAGGAG
AAAGAGGTGG TGCTCTCTGC AAAAACAACA GAGAAAAAGT GGCCTAAGAT TATGGCTTTT
ATTCAAGGCG CTCATCCGTA CGATTTGCCT GAGATATTAG CATGTGTGCC TGAACAATAT
GAAAAGCAAT ACGGCAAATG GGTTGAGTCT GAGGTAAATT CGAAGTCATG A
 
Protein sequence
MSEILPVNSS KLLVVVTSLP NVEAGKDLAR ALVEQNIAAC VQLTNGIESI YRWEGKICEE 
KEVVLSAKTT EKKWPKIMAF IQGAHPYDLP EILACVPEQY EKQYGKWVES EVNSKS