| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0076 |
|---|
| Symbol | |
|---|
| ID | 6184060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 70443 |
|---|
| End bp | 71423 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641670818 |
|---|
| Product | DNA-directed RNA polymerase subunit alpha |
|---|
| Protein accession | YP_001797018 |
|---|
| Protein GI | 171462905 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.00000022128 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAA ATTTGCTCAA GCCAAAGATT ATTTCTGTTG AAGCGCTTAC CGCCAACCAA
GCTAAAGTTG TTATGGAGCC GTTCGAGCGT GGCTATGGCC ACACACTCGG AAACGCATTG
CGTCGTGTGC TTTTGTCCTC GATGGTTGGT TATGCGCCAA CTGAAGTAGC TATTGCTGGT
GTTGTTCATG AGTACTCCAC TTTAGATGGA GTTCAAGAGG ATGTAGTTAA CCTTTTGTTG
AACCTCAAAG GTATCGTATT TAAGTTGCAG TCACGTGACG AAGTTATTAT CAATTTGCGT
AAAGAAGGCC CAGGCGTTGT TACAGCAAAA GATATCGATT TGCCACATGA TGTAGAAATC
ATGAATCCTG ATCATGTTAT TGCCCATTTG TCCGCTGGCG GCAAGTTGGA CATGCAGATT
AAGGTTGAAA AAGGCCGTGG TTATGTTCCG GGTAACGTAC GTCAGTACAA CGACGAAGCT
ACTAAGATTA TTGGCCATAT TGTTTTAGAT GCATCGTTTA GCCCAGTTAG CCGTGTTAGC
TATGCTGTTG AGTCTGCTCG TGTTGAGCAA CGTACCGACC TCGATCGTTT AGTAATGACT
ATCGAAACTA ACGGTGTTTT GTCTCCTGAG GAGGCAATTC GTCAAGCAGC TAGCATCTTG
GTTGATCAGT TGGTTGTATT CGCAGCCCTC GAAAGCAGCG AAGTTTCTGG TGATTTGGCA
CCAAGCCGCT CTTCAATGGT TGATCCAATG TTGATGCGCC CAGTAGATGA CCTCGAGTTG
ACAGTTCGCT CTGCTAACTG CTTGAAGGCT GAGAACATTT ACTACATCGG TGACTTGATT
CAACGTACAG AGAATGAATT GTTGAAGACG CCTAATCTAG GTCGTAAATC TTTGAATGAA
ATTAAAGATG TTTTGGCGGC CCGTGGCTTA AGTCTTGGCA TGAAACTCGA AAGCTGGCCT
CCAGCTAACC TCGAGAAATA A
|
|---|
| Protein sequence | MQTNLLKPKI ISVEALTANQ AKVVMEPFER GYGHTLGNAL RRVLLSSMVG YAPTEVAIAG
VVHEYSTLDG VQEDVVNLLL NLKGIVFKLQ SRDEVIINLR KEGPGVVTAK DIDLPHDVEI
MNPDHVIAHL SAGGKLDMQI KVEKGRGYVP GNVRQYNDEA TKIIGHIVLD ASFSPVSRVS
YAVESARVEQ RTDLDRLVMT IETNGVLSPE EAIRQAASIL VDQLVVFAAL ESSEVSGDLA
PSRSSMVDPM LMRPVDDLEL TVRSANCLKA ENIYYIGDLI QRTENELLKT PNLGRKSLNE
IKDVLAARGL SLGMKLESWP PANLEK
|
|---|
| |