Gene Pnec_0064 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0064 
SymbolrpsH 
ID6184139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp64609 
End bp65004 
Gene Length396 bp 
Protein Length131 aa 
Translation table11 
GC content46% 
IMG OID641670806 
Product30S ribosomal protein S8 
Protein accessionYP_001797006 
Protein GI171462893 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0096] Ribosomal protein S8 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000237116 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value9.24625e-17 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTATCA GCGATCCAAT CGCCGACATG TTGACCCGGA TCCGCAATGC GCAAGCAGTG 
CAAAAGCCGT TAGTCACAAT GCCGTCGTCA AAAGTTAAAG TAGCCATTGC AAAAGTTTTG
CAAGATGAAG GCTATATCGA AAATTTCGAA ATCAAAGGTG AAGCGGCTAA GCCAGTGCTC
CACATTGATC TTAAATACTA TGCAGGCCAT CCTGTTATTG AACGTATCGA CCGTGTATCT
ACACCAAGTC TGCGTATCTA TAAAGGCCGT CATGACATTC CAGAGGTAAT GAATGGCTTG
GGCATTGCAA TTATTTCAAC CCCTCAAGGC GTAATGACAG ACCGTAAAGC ACGTGCAACA
GGCGTGGGCG GCGAAGTTAT TTGCTACGTA GCATAA
 
Protein sequence
MSISDPIADM LTRIRNAQAV QKPLVTMPSS KVKVAIAKVL QDEGYIENFE IKGEAAKPVL 
HIDLKYYAGH PVIERIDRVS TPSLRIYKGR HDIPEVMNGL GIAIISTPQG VMTDRKARAT
GVGGEVICYV A