Gene Pnec_0051 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0051 
SymbolrplD 
ID6184025 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp58707 
End bp59327 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content44% 
IMG OID641670793 
Product50S ribosomal protein L4 
Protein accessionYP_001796993 
Protein GI171462880 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000000062417 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.36643e-25 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAACTTA AGCTTCTCCA AGACAACGGT ATTTTAGGCG CAGGCGTACA AGCTTCGCCA 
GAAGTATTCG AACGTGAATA CAACGAAGCA TTGGTGCATC AAGTTGTGGT GGCATACCAA
GCAAATGCGC GTAGCGGTAA TCGTGCACAA AAAGACCGTG AGCAAGTTAA GCACACAACC
AAGAAACCTT GGCGTCAAAA GGGTACTGGT CGTGCACGTG CTGGTATGAG CTCTTCCCCG
CTGTGGCGTG GAGGTGGTCG TATATTCCCG AATTCTCCAG AAGAGAATTT CAGCCAAAAA
GTAAACAAGA AAATGTACCG CGCTGGTATG AGATCCATTT TGTCTCAGTT AGCTCGCGAA
GGTCGTTTGA ATGTTATCGA TCAATTCAAT CTTGATGCTC CAAAAACCAA AGTTTTAGCT
GAAAAAATGA AAGCAATGGG CTTGGATTCA GTCTTGATCA TCGTTGATCA GGTTAGTGAG
AACTTGTACT TGGCATCACG TAACTTACAT AAGGTTGCAG TGGTTGAGCC ACAGCACGCA
GATCCATTGG CTTTAGTTCA ATATAAAAAA GTATTGGTAA GTAAAGCTGC GATCACAAAA
ATTGAGGAGT TGCTGAAATG A
 
Protein sequence
MELKLLQDNG ILGAGVQASP EVFEREYNEA LVHQVVVAYQ ANARSGNRAQ KDREQVKHTT 
KKPWRQKGTG RARAGMSSSP LWRGGGRIFP NSPEENFSQK VNKKMYRAGM RSILSQLARE
GRLNVIDQFN LDAPKTKVLA EKMKAMGLDS VLIIVDQVSE NLYLASRNLH KVAVVEPQHA
DPLALVQYKK VLVSKAAITK IEELLK