Gene Pnec_0050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_0050 
SymbolrplC 
ID6184043 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp58039 
End bp58695 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content50% 
IMG OID641670792 
Product50S ribosomal protein L3 
Protein accessionYP_001796992 
Protein GI171462879 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000000105165 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.58179e-26 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGCTTAG GCTTAATCGG CCGCAAGGTC GGCATGACCC GTCTATTTAC GGACGAAGGG 
GAAGCGATTC CTGTCACCGT AATCGACGTG AGCGACAACA GAGTCGCTCA AATCAAGACC
CAGGCAACTA ATGGCTATGA TGCTATCCAG TTGGCACATG GCACACGTAG AGCTACTCGC
GTCACCAAAG CAATGGCTGG TCACTTCGCC AAAGCGGGAG TGATGGCTGG TAACGCTCTC
AACGAATTTC ATTTAGACGC AGCAAAGATT GCAGAAATGA CGCCAGGACA AGTAATTCCT
GCAGAAACCG CATTTACTGC TGGTCAAAAG GTGGACGTAC AGGGGGTGAC TATCGGTAAG
GGTTACGCAG GTACCATCAA GCGTTATCAC TTCGCTTCTG GTCGTGCATC CCACGGTAAC
TCACGTTCGC ATAACGTACC AGGCTCTATC GGTATGGCGC AAGATCCAGG TCGTGTTTTC
CCTGGTAAGC GTATGACCGG TCACTTGGGT GACATTACAC GTACAGTTCA AAATTTAGTC
ATCGCACGCA TTGATGCAGA ACGTAATCTC ATCATGGTTA AAGGCGCTAT TCCAGGCGCC
CCAGGCGGTA AAGTTATTGT TACTCCAGCG GTTAAAACAC CGTTGAAGAA GAAATAA
 
Protein sequence
MSLGLIGRKV GMTRLFTDEG EAIPVTVIDV SDNRVAQIKT QATNGYDAIQ LAHGTRRATR 
VTKAMAGHFA KAGVMAGNAL NEFHLDAAKI AEMTPGQVIP AETAFTAGQK VDVQGVTIGK
GYAGTIKRYH FASGRASHGN SRSHNVPGSI GMAQDPGRVF PGKRMTGHLG DITRTVQNLV
IARIDAERNL IMVKGAIPGA PGGKVIVTPA VKTPLKKK