| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0039 |
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| Symbol | rplA |
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| ID | 6184089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 42373 |
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| End bp | 43074 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641670781 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_001796981 |
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| Protein GI | 171462868 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00138059 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00000000000807787 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGACTAAAT TATCTAAACG CGTAAAAGTA ATTCAATCTA AGATTGATCG CAATAAGTTT
TATTCATTGG ATGATGCATT GAACCTCGTT AAAGAGTGTG CGACTGCTAA GTTTGATGAG
TCTATCGACG TTGCGGTTCA ATTGGGTATT GATGCCAAGA AATCTGACCA AGTTGTGCGT
GGCGCAGTAG TACTTCCAGC CGGCACAGGC AAGTATGTTC GTGTTGCTGT TTTTGCACAA
GGCGAGAAGG CTGAGCAAGC TAAAGCTGCT GGCGCAGAAA TCGTTGGCAT GGAAGATTTA
GCCGATCAAA TTAAAAGCGG CAAGATTGAC TTTGACGTTT TAATTGCATC CCCGGACACA
ATGAAAATTG TCGGTACCTT AGGTCAAGTA TTGGGCCCAC GTGGTTTGAT GCCGAATCCA
AAGGTTGGAA CTGTTACTCC TGACGTTGCT ACTGCAGTTA AAAATGCAAA AGCAGGTCAA
GTCCAGTTCC GTGTGGACAA AGCCGGTATC GTGCACGCAA GTATTGGCCG TCGTTCATTC
GAGCCAACTG CATTGAAATC TAACTTGCTC GCATTGCTTG AGGCTTTGAA TAAAGCAAAA
CCTCCTGCAT CCAAGGGCGT TTATTTAAAG AAGGTTGCCG TAAGCAGCAC TATGGGTGCG
GGCGTACGCG TAGACCAAGC ATCGTTGCAG GCGGCAGCTT AA
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| Protein sequence | MTKLSKRVKV IQSKIDRNKF YSLDDALNLV KECATAKFDE SIDVAVQLGI DAKKSDQVVR
GAVVLPAGTG KYVRVAVFAQ GEKAEQAKAA GAEIVGMEDL ADQIKSGKID FDVLIASPDT
MKIVGTLGQV LGPRGLMPNP KVGTVTPDVA TAVKNAKAGQ VQFRVDKAGI VHASIGRRSF
EPTALKSNLL ALLEALNKAK PPASKGVYLK KVAVSSTMGA GVRVDQASLQ AAA
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