| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0025 |
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| Symbol | |
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| ID | 6183225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 24709 |
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| End bp | 26835 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641670759 |
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| Product | primosomal protein N' |
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| Protein accession | YP_001796969 |
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| Protein GI | 171462856 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
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| TIGRFAM ID | [TIGR00595] primosomal protein N' |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.46357 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.000104497 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCTCTC CTATCGTTGT TCAAGTCGTT GTTGGCAAGC CCCTTGCCCA GGGCTTTGAC
TACTTGTGGG ATGAGGCGTT ACTCGGATGC TCCCCGACCA TAGGTGCGTT AGTGGAGGTT
CCTTTTGGGC GAGGTCTCTT GGTCGGATTG GTTATAAAAG TAAGTGCTCA CTCTGATTAT
GAATTCGACA AATTAAAGCG CGTAACTAAA TGCGCCCCGT TGCCGCCCTT GGACCCCGCT
GTTTTGCGCT TGACGAACTT TGCAAGCCAG TATTACATCC ACACCCTTGG AGAAACCATC
ATTCCCACTA TTCCACAGAT TTGGAAAAAG GCAGATGACT GGGAAAAAAT TCCAAAGAAG
TTAGCTGTAT CTGACGAAAA GAAAAGCAAA AAAATTAAGC AAGAGGCAAC TGAAGGATAT
GTGAATGAAG AGCGTTTAAA TGAAGGACAA AAACTCGCAT TAGAAAAATT GCGCTCTTGC
CCCTCGAGTG ATTTCAAAGC AATTCTCTTG CAAGGACAAA CAGGTAGCGG AAAAACTGCA
GTCTTTTTAA ATTGGCTCAG TGGAATCTTA GATAATGTAA ATGCGCAAGT GTTGCTATTG
GTGCCTGAAA TTAATTTAAC ACCACAGTTA GAACGCAGAG TGCGCGCATA TTTTCCAGAT
AAAGAAATGG TTGTACTTCA CAGTGGCGTG AGTGAAATCG CAAGAGGCAT TGCATGGCAT
AACGCAATGA CTGGAAACGC TCAAATAATT TTGGGTACAC GATTGGCTGC ACTAACGCCT
ATGCCAAACC TGCGCGCCAT TGTTGTTGAT GAAGAGCATG ACCCATCCTA TAAGCAGCAA
GACGGCATTC GTTACTCTGC ACGAGACCTG GCAATTTGGC GTTCTCATGA TTTAAAGATA
CCAATCCTAT TAGCTTCTGC CACACCATCC CTTGAAACTT GGATGGCCGC TAAAGCCGGT
CGCTATGAGT ATGTCCGTCT AGATCAGCGA GCCCAGGGCG CAAGCTTGCC AAGAGTCCAT
TTGGTAAATA CACGCGATCC ACAAACTCAG TTTAGTCCCG GCGATTTAGA AAAACAAAAA
CCAAAAAGTT TGATTACCAA AACGCTTGCT AACGCAGTCA CTCGTAACCT AGAAGCTAAA
CAGCAAAGCT TGATACTGAT TAACCGTCGA GGTTATGCGC CGGTACTCAG CTGTGGGGCT
TGTTCGTGGT TGTCTAAATG TGAGCAATGT AGTTCCTATA TGGTTCTCCA TAAGGCAGGT
GCTTTGGGAA GGAAATCGGT TTTGAGCTGT CATCACTGCG GTTTGGTGAA GCCCATTCCT
AGCAATTGTC CTGGTTGTGG AAACACTGAT CTTAAGACCC TGGGGCAAGG CACCCAAAAG
ATAGAAGACT CTATTGAGGA GATGTGGCCT AGTGCTCGGG TATTGAGGGT CGATACAGAC
TCCAGCCGAA AGAGCAAGGG CGCCGAAGAG CTTTTTCAGG AGATACACGC AGGAAATGTA
GATATCGTGG TTGGCACCCA GATGATTGCG AAGGGGCACG ATTATCAAAA TATTGGATTA
GTTGCGGTAT TAGATGCAGA TAGTAGATTG TTCTCTCAGG ACTTTAGGGC TGCAGAAAGA
TTGTTTGCTC AATTGGTTCA GGTGGCTGGT CGTGCCGGAA GAGCGGGCAA GGATGGGGAA
GCGGGTGGCG CAATTTATAT CGAAACTCAG TTTCCAGAGG CTGCAGTTTT TCAGTTTTTG
CTGCGCCATG ATGTTGATGG ATTTTTAGCC TTTACGGCCA ATGAAAGAAA AGAAGCCGGC
TTGCCCCCTT TTGCTTATCA GGCATTAGTG CATGCCGAAG CTAAAAGTTT GGATAAAGCA
ATTCAATTTT TAAGTCATTT GAAGGGCCAT TTAAAGTCTG GAGGGCATAT ATCTAAAGGC
TTACGGGTTT ACGATCCCGT TCCCAAGGCA ATGATGCGCG TAGCAGGTTC GGAGCGCGCT
CAACTCCTTG TTGAGTCTGG CGACCGCAAA AACCTACAAG AAATCTTAGA GATAATGGAC
CGCTATTTAC GCGAGAACTC TCAGGGACGT ATCAGCAAAG AAGGCCGCAT TCGCTGGTTA
ATTGAGCGCG ACCCCATTTC AATTTAA
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| Protein sequence | MTSPIVVQVV VGKPLAQGFD YLWDEALLGC SPTIGALVEV PFGRGLLVGL VIKVSAHSDY
EFDKLKRVTK CAPLPPLDPA VLRLTNFASQ YYIHTLGETI IPTIPQIWKK ADDWEKIPKK
LAVSDEKKSK KIKQEATEGY VNEERLNEGQ KLALEKLRSC PSSDFKAILL QGQTGSGKTA
VFLNWLSGIL DNVNAQVLLL VPEINLTPQL ERRVRAYFPD KEMVVLHSGV SEIARGIAWH
NAMTGNAQII LGTRLAALTP MPNLRAIVVD EEHDPSYKQQ DGIRYSARDL AIWRSHDLKI
PILLASATPS LETWMAAKAG RYEYVRLDQR AQGASLPRVH LVNTRDPQTQ FSPGDLEKQK
PKSLITKTLA NAVTRNLEAK QQSLILINRR GYAPVLSCGA CSWLSKCEQC SSYMVLHKAG
ALGRKSVLSC HHCGLVKPIP SNCPGCGNTD LKTLGQGTQK IEDSIEEMWP SARVLRVDTD
SSRKSKGAEE LFQEIHAGNV DIVVGTQMIA KGHDYQNIGL VAVLDADSRL FSQDFRAAER
LFAQLVQVAG RAGRAGKDGE AGGAIYIETQ FPEAAVFQFL LRHDVDGFLA FTANERKEAG
LPPFAYQALV HAEAKSLDKA IQFLSHLKGH LKSGGHISKG LRVYDPVPKA MMRVAGSERA
QLLVESGDRK NLQEILEIMD RYLRENSQGR ISKEGRIRWL IERDPISI
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