| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0024 |
|---|
| Symbol | |
|---|
| ID | 6183219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 23399 |
|---|
| End bp | 24442 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641670758 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_001796968 |
|---|
| Protein GI | 171462855 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.373394 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.000193668 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGACAAG CCGGCCGTTA TCTCCCCGAA TACAATGCAA CGCGCGCTAG AGCCGGAAGT
TTTCTAGGGC TCGCAAAAAA TCCTGCTTAT GCCACTGAAG TAACCCTTCA ACCCTTGGAT
CGTTATCCAT TGGATGCCGC TATTTTGTTC TCCGATATTT TGACCATTCC TGATGCGATG
GGATTGGGGC TCAAATTTAC TGCTGGCGAA GGCCCAAGTT TTGAATGCCC GCTTCGCACA
GAAGAGGCGA TTAAGAAATT ACGTTTAGCT GATATGGATC AGCTCAAATA TGTTTTTGAT
GCTGTTTCGG AAATTCGTAA AGCACTGATT CAGGATGGCA AGCAGCGCGT GCCTTTGATC
GGCTTCTCTG GAAGCCCATG GACACTGGCT TGCTACATGA TTGATGGATC AAGTGCAGAT
GATTTCCGCC ATGCCAAAAC CATGATGTTT AGTCGTCCCG ATTTGATGCA GCATATCTTA
GATATCAACG CACAATCTGT TGCCGCTTAT TTAATTGAAC AAGTTAAAGC GGGTGCGCAA
GCGCTGATGA TCTTTGATAC CTGGGGCGGA ATGCTTCCAG ATGGCTGGTA TCAAAAGATG
TCTTTAGCGT CTATGCAAAA AGTGATTGCT ATGTTGCCGC GCGAACATGA AGGCAGAAAA
ATTCCAGTCA TCCTGTTTAC TAAAGGCGGC GCAATATGGC TTAATGACAT GGCGCAAGCT
GGTGCTGATG TCATTGCTCT GGACTGGACT ATGTCGCTGA GTCGTGCAAG AAAACAATTG
CTTGCAATCG ACAAGCCTTT GGCATTGCAA GGAAATCTAG ACCCGCTAAT CCTATTCGCA
GAGCCAAAAC GAATCACGGA ACAAGCAAAC CTTCTTCTGG AAGATTTGGC GAGTGCACCG
GTTCTTAAAT CCGGCTTGCA TCCTTTGGAT GGCCATGTGT TTAATTTGGG CCACGGCACT
TCCCAGTTCA CCCCTCCGGA AAGCGTCACC GCTCTTGCAG AAGCAGTGAT TAATAGCTCA
AGGTCCCTCA GGGCAAAGTC ATAA
|
|---|
| Protein sequence | MRQAGRYLPE YNATRARAGS FLGLAKNPAY ATEVTLQPLD RYPLDAAILF SDILTIPDAM
GLGLKFTAGE GPSFECPLRT EEAIKKLRLA DMDQLKYVFD AVSEIRKALI QDGKQRVPLI
GFSGSPWTLA CYMIDGSSAD DFRHAKTMMF SRPDLMQHIL DINAQSVAAY LIEQVKAGAQ
ALMIFDTWGG MLPDGWYQKM SLASMQKVIA MLPREHEGRK IPVILFTKGG AIWLNDMAQA
GADVIALDWT MSLSRARKQL LAIDKPLALQ GNLDPLILFA EPKRITEQAN LLLEDLASAP
VLKSGLHPLD GHVFNLGHGT SQFTPPESVT ALAEAVINSS RSLRAKS
|
|---|
| |