| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0003 |
|---|
| Symbol | |
|---|
| ID | 6184206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 2929 |
|---|
| End bp | 5427 |
|---|
| Gene Length | 2499 bp |
|---|
| Protein Length | 832 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641670738 |
|---|
| Product | DNA gyrase, B subunit |
|---|
| Protein accession | YP_001796948 |
|---|
| Protein GI | 171462835 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
|---|
| TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0724029 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 0.0722311 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAG AAAAAAAAGT AGTAGAGCAG TACGGCGCTG CATCGATTCA AATCCTAGAG
GGTCTTGAGG CTGTTCGTAA ACGTCCCGGT ATGTACATTG GAGATACCTC CGATGGAACA
GGCCTACATC ACCTTGTTTT TGAGGTGTTG GACAACTCAA TTGACGAAGT ATTAGCGGGA
TACTGTTCGG AAATCACTGT AGTTATTCAG ACTGATAACT CAATTTCTAT TGTTGATAAC
GGCCGCGGCG TTCCTACAGG TATTAAATAC GACGACAAGC ATGAGCCAAA AAGAAGTGCT
GCTGAAATCG CAATGACCGA GCTTCATGCT GGTGGTAAGT TTGACCAAAA TAGCTATAAG
GTTTCCGGCG GTTTACATGG TGTGGGTGTA AGTTGTGTAA ATGCACTATC CAAATGGTTG
AGATTAACTA TTCGCCGTGA TGGCAAGGCG TATTACATGG AGTTTGCGCG CGGCGTCATT
CAAAATCGAA ATGTGGTTGA TGAGGGTGGT GTATTGATTT CTCCAATCAC CGTTACAGGC
GACACGGAGC TTTCGGGAAC TGAGGTTCAT TTCTTAGCCG ACGAAGAAAT CTTTGGAAAC
GTAGAGTTTC ATTATGAGAT TTTGGTTAAA CGTATTCGTG AACTTTCGTT TTTAAATAAC
GGCGTACACA TTAAGTTGAT TGACCAACGT ACAAGTCAAA AAGAGGATTT CGCCTTTTCT
GGTGGTGTTA AGGGTTTTGT TGAATACATC AACCAAACCA AAAACATTTT ACACCCCAAT
ATTTTTTATG CAGAAGGTGT TCGCCCATCA GATTTGGGTG GTCAAATTAC CGCGGAAGTA
TCAATGCAGT GGAATGATGG TTTTAGTGAA CAAGTACTTT GTTTTACTAA CAACATCCCA
CAACGAGATG GTGGAACCCA TTTAACAGGT TTACGTGCAG CCATAACTCG GGTTATCAAT
AAATATATTG ATGAGAATGA GATCGCCAAA AAGGCAAAGG TAGAAATTTC TGGTGATGAT
ATGCGTGAAG GTTTAGCTTG CGTTTTATCT GTCAAAGTTC CAGAACCAAA ATTTTCGAGT
CAAACTAAAG ATAAACTGGT CTCAAGCGAG GTTCGTGGAC CGGTAGAAGA AATTGTTGCA
GAAGCCTTAA GTGCTTATTT ACAAGAGCGC CCAGCGGACG CAAAAATTCT CTGCGGAAAG
ATTGTTGATG CTGCGCGTGC TCGTGAGGCT GCCCGCAAGG CGCGGGATAT GACCCGTTGT
AAAGGTGCGT TGGATGGTTT GGGTTTACCG GGTAAGTTGG CCGATTGCCA AGAAAAAGAC
CCATCTAAAT CTGAATTGTT TATTGTCGAG GGCGACTCTG CGGGCGGCTC TGCTAAACAA
GGTCGAGATC GTCGTTTTCA GGCCATTCTT CCTTTAAAAG GAAAAATCCT AAATGTTGAG
AAGGCGCGCT TTGACAAAAT GTTTGCTAGC CAAGAAGTGG TTACCTTAAT TACCGTGCTT
GGGACAGGTA TTGGTATTGA AGAATATAAA GCCGACAAAC TTCGCTATCA CCGTATCATT
ATCATGACCG ACGCGGACGT TGATGGTAGT CACATCCGCA CACTCTTGTT GACATTCTTT
TATAGACAGA TGCCGGAGTT GATTGAACGT GGCCATATTT TCATTGCGCA ACCACCACTT
TATAAGGTGA AGTTTGGCAA GAGTGAGCAA TACATTAAGG ATGACAATGA GCTAAACCAG
TTGTTGTTGA GGATAGCTTT AGAAACCGCA TCCTTACAAA CACCATCTGG TGAAATTATT
GAGGGCGATG CCCTTAACGA GTTGGTAAAG CACTACCAAG TGATTCAGTC GATTGTCGAT
CGATTTTCTC GCACCATTGA TGAAGATGCT CTTCGCGCTA TTGCTTCGGG TACCTCATTA
AATCTGGATA CTGAAAAATC AGCAAATGAT TCTGCTGATC GTTTGCGACA AGCGCTTGCA
GATTCTTTAA ATCCATTGGC TGCGGCACCA GAAATCATTG TGCAAAAAGA AGATCGTACC
GAACGCTACC GCTTGCTCTT ATCTCGTCGA ATCCATGGCA ACTTAAAACT GTCCTCCATT
AATTCAGACT TTGTGCATGG TGATGATTAT CAAAGTCTTG CAAATGCGGC AGCAGTTTTA
TCTGGCAAGG TTGTTGCTGG CTCCAAAGTT CGTCGTGGTG ATCCAGACAA AAACCAAAAA
GAACAAACTA TCGGTGATTT TAGAGCTGCC TTTGCATGGT TGTTGTCCGA AGCAGAGCGC
GTATTAAGTC GTCAACGATA CAAAGGTCTT GGTGAGATGA ACCCATCTCA ATTATGGGAA
ACCACCATGG ATGCAAACTC AAGAACACTT CTGCAGGTAA AGATTGAAGA TGCAATTGCT
GCAGACCAGG TCTTTACAAC CCTAATGGGC GATGAAGTTG AGCCCCGCCG TGCGTTCATT
GAAAAAAATG CACTTATTGC ACGCAACCTA GACGTTTAA
|
|---|
| Protein sequence | MTEEKKVVEQ YGAASIQILE GLEAVRKRPG MYIGDTSDGT GLHHLVFEVL DNSIDEVLAG
YCSEITVVIQ TDNSISIVDN GRGVPTGIKY DDKHEPKRSA AEIAMTELHA GGKFDQNSYK
VSGGLHGVGV SCVNALSKWL RLTIRRDGKA YYMEFARGVI QNRNVVDEGG VLISPITVTG
DTELSGTEVH FLADEEIFGN VEFHYEILVK RIRELSFLNN GVHIKLIDQR TSQKEDFAFS
GGVKGFVEYI NQTKNILHPN IFYAEGVRPS DLGGQITAEV SMQWNDGFSE QVLCFTNNIP
QRDGGTHLTG LRAAITRVIN KYIDENEIAK KAKVEISGDD MREGLACVLS VKVPEPKFSS
QTKDKLVSSE VRGPVEEIVA EALSAYLQER PADAKILCGK IVDAARAREA ARKARDMTRC
KGALDGLGLP GKLADCQEKD PSKSELFIVE GDSAGGSAKQ GRDRRFQAIL PLKGKILNVE
KARFDKMFAS QEVVTLITVL GTGIGIEEYK ADKLRYHRII IMTDADVDGS HIRTLLLTFF
YRQMPELIER GHIFIAQPPL YKVKFGKSEQ YIKDDNELNQ LLLRIALETA SLQTPSGEII
EGDALNELVK HYQVIQSIVD RFSRTIDEDA LRAIASGTSL NLDTEKSAND SADRLRQALA
DSLNPLAAAP EIIVQKEDRT ERYRLLLSRR IHGNLKLSSI NSDFVHGDDY QSLANAAAVL
SGKVVAGSKV RRGDPDKNQK EQTIGDFRAA FAWLLSEAER VLSRQRYKGL GEMNPSQLWE
TTMDANSRTL LQVKIEDAIA ADQVFTTLMG DEVEPRRAFI EKNALIARNL DV
|
|---|
| |