| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0002 |
|---|
| Symbol | |
|---|
| ID | 6184194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 1802 |
|---|
| End bp | 2917 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 641670737 |
|---|
| Product | DNA polymerase III subunit beta |
|---|
| Protein accession | YP_001796947 |
|---|
| Protein GI | 171462834 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.157006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 0.0483245 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTCG TTAACACTTC TCGCGATAAC TTACTAAAAC CTCTTCAGGT TGTTAGTGGA
ATTGTTGAAC GCAGACATAC ACTACCAATT TTGGCTAATC TACTTTTTAA AAAGATTGAG
GAAAAAGTTT CCTTTGTCTC TACTGATATT GAAATTCAAA TCACCACTAA TGCAAATTTT
GGTGTTGGTA GTGAGGATGT AACGACAACT GTTGCCGCAA GAAAATTACT TGATATTTTG
CGTGCGTTAC CAGAAGGTCC AGTGTTTTTA AATCTTAAGG ACAGTAAAAT GGTTGTTCAA
AGCGGTAAAA GCCGCTTTTC TTTACAAACA CTATCCGCGA CAGAGTTTCC TGTGATGCAA
AGTGTTGGTG AGGTGACTGC TGCATGGAAG ATGTCACAAA AGAGCTTCCG CCAGTTAATT
AGTCAAGTGC ATTTTTCAAT GGCACAGCAA GATATTCGTT ATTACTTAAA CGGTATGTTG
TTAGTCGTTG AAGGTAAGGA GGTTGTTGCT GTTGCGACCG ACGGTCATCG CCTTGCATAT
TCACAAGTTG AGTTGGTTGA AGCTCCATCT GGCTCGGGTC AGAAGCAAGA AGTCATCATT
CCACGTAAAA CTATTTTGGA ATGTCAGCAT TTACTGGAAG GCTCTGATGA GCCTCTTGAG
ATTAGCCTGA CCGCAAACCA AGTGAAGTTT TCTTTTGGTG ATATTGAGTT AATTTCTAAG
TTGGTTGAAG GAAAGTTTCC TGATTTCCAA AGAGTAATTC CAAAAGGGCA AAAGAACTCA
TTAGTAGTCG GACGTGATGC TTTGCAATCT GCTCTTCAAC GTGCCGCTAT TTTGACAACG
GATAAATTTA AAGGCGTTCG TTTTTCCTTG TCACCCAATC GCATTACCAT TCAATCAACT
AACGCCGAAC AAGAAGAAGC TCAAGAAGAG ATTGAAACAG AATATGCCGG CGATGCTGTG
GAGATTGGAT TTAATGTGAG CTATTTACTT GATGTTTTAT CAAACCTCAA GAATGAAAAA
ATTCAAATTA GTTTGGGTGA TGCAAATAGT AGTGCTGTGA TTACTCTGCC TGGCTCAGAG
AGCTTTAAGT ATGTTGTGAT GCCAATGCGT ATTTAA
|
|---|
| Protein sequence | MQLVNTSRDN LLKPLQVVSG IVERRHTLPI LANLLFKKIE EKVSFVSTDI EIQITTNANF
GVGSEDVTTT VAARKLLDIL RALPEGPVFL NLKDSKMVVQ SGKSRFSLQT LSATEFPVMQ
SVGEVTAAWK MSQKSFRQLI SQVHFSMAQQ DIRYYLNGML LVVEGKEVVA VATDGHRLAY
SQVELVEAPS GSGQKQEVII PRKTILECQH LLEGSDEPLE ISLTANQVKF SFGDIELISK
LVEGKFPDFQ RVIPKGQKNS LVVGRDALQS ALQRAAILTT DKFKGVRFSL SPNRITIQST
NAEQEEAQEE IETEYAGDAV EIGFNVSYLL DVLSNLKNEK IQISLGDANS SAVITLPGSE
SFKYVVMPMR I
|
|---|
| |