| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0001 |
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| Symbol | |
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| ID | 6183178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 113 |
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| End bp | 1537 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641670736 |
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| Product | chromosomal replication initiator protein DnaA |
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| Protein accession | YP_001796946 |
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| Protein GI | 171462833 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0593] ATPase involved in DNA replication initiation |
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| TIGRFAM ID | [TIGR00362] chromosomal replication initiator protein DnaA |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0537995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 0.168321 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACC TACATAATCC CCCCGCCTTG AATTCAATCA GCCCACTGGG GTTTTGGGAT
GATGCCGTTG GCATCTTATC TCGCGAACTA TCGCCCCAAC AGTTTAAAAC ATGGATTCAG
CCCCTTATTT TATTGTCTTT TGTTGAAAGT GATGACTCGC TAACAATTGG CGCCCCAAAC
CGCTTTAAGC TGGATTGGAT TAAGAAAACT TTTGCTGATA GATTCCAAGA GTTGGCCACC
CAGTACTTTG GTCGACCCAT AAATGTAGGC TTTACTTTGG CCCTTGAGGC CAACCCAAAC
AATCTTGCTC CCAACACAAC CATTCAAGAG CCCCCACAAA GCGTGGTAAT AGAGGCTCTC
GAACCAGTAA TTTCGGTTGA AGATAGTAGT TTTGAAATTG AAGACCACTC AAAACTAAAC
CCAAACCTCA CTTTTGAAAC ATTTGTCACC GGTAAGGCCA ATCAACTGGC TAGGGCCGCA
TCAATTCAGG TGGCTCACAA CCCTGGTACA TCGTATAACC CCATGTTTTT ATATGGTGGG
GTTGGTTTAG GTAAGACCCA TCTAATTCAC GCTATTGGTA ACCACCTTTT AAAAGAGAAA
CCTAACGCTC GTATCCGCTA CATACACGCC GAGCAGTACG TTTCTGATGT GGTTCGCGCC
TATCAACAAA AGGCTTTTGA TCGTTTTAAG CGTTATTACC ATTCTTTAGA CCTATTGTTA
ATTGATGATA TTCAGTTTTT TAGTGGTAAA TCGAGAACTC AAGAAGAGTT TTTCTACGCC
TTTGAGGCTT TATTAAGCAA CAAATCTCAA GTAATTATTA CTGGCGATAC ATACCCAAAA
GAAATGGCGG GCATTGATGA TCGCCTTATC TCTCGCTTTG ACTCTGGTCT AACGGTCGCC
ATTGAGCCAC CAGAACTTGA AATGCGTGTG GCAATTTTGA TGAAGAAGGC AATTGGTGAG
GGTATACCAA TGAGCGAGGA TGTGGCCTTC TTTGTAGCCA AACACCTTCG ATCAAATGTG
CGGGAGTTAG AGGGCGCTTT AAGGAAAATA TTGGCTTTTG TGCGCTTTCA TGGGCGAGAG
GTGACTATTG AGGTTGCCCG GACAGCCTTA AAGGACCTGC TTTCCATTCA AAATCGTCAA
ATTTCTGTTG AGAATATACA AAAGGCAGTA GCAGATTTTT ACAGTATTAA GGTTGCGGAT
ATGTACTCCA AAAAACGTCC GGCCAATATA GCCCGGCCGC GCCAAATTGC TATGTTTATG
GCAAAAGAGT TAACGCAAAA GAGCCTTCCA GAGATTGGTG AATTATTTGG TGGCAGGGAT
CACACAACCG TTCTACACGC TGTTCGTAAA ATTGCTGATG AAAGATCTCA CGATAGCCAG
CTCAATCACG AAATTCACGT TATTGAGCAA ACCCTAAAGG CTTAA
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| Protein sequence | MSNLHNPPAL NSISPLGFWD DAVGILSREL SPQQFKTWIQ PLILLSFVES DDSLTIGAPN
RFKLDWIKKT FADRFQELAT QYFGRPINVG FTLALEANPN NLAPNTTIQE PPQSVVIEAL
EPVISVEDSS FEIEDHSKLN PNLTFETFVT GKANQLARAA SIQVAHNPGT SYNPMFLYGG
VGLGKTHLIH AIGNHLLKEK PNARIRYIHA EQYVSDVVRA YQQKAFDRFK RYYHSLDLLL
IDDIQFFSGK SRTQEEFFYA FEALLSNKSQ VIITGDTYPK EMAGIDDRLI SRFDSGLTVA
IEPPELEMRV AILMKKAIGE GIPMSEDVAF FVAKHLRSNV RELEGALRKI LAFVRFHGRE
VTIEVARTAL KDLLSIQNRQ ISVENIQKAV ADFYSIKVAD MYSKKRPANI ARPRQIAMFM
AKELTQKSLP EIGELFGGRD HTTVLHAVRK IADERSHDSQ LNHEIHVIEQ TLKA
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