| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tneu_1457 |
|---|
| Symbol | |
|---|
| ID | 6165570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermoproteus neutrophilus V24Sta |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010525 |
|---|
| Strand | - |
|---|
| Start bp | 1297452 |
|---|
| End bp | 1299686 |
|---|
| Gene Length | 2235 bp |
|---|
| Protein Length | 744 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641668615 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001794828 |
|---|
| Protein GI | 171185909 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.507421 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATTTCC TGGAGGAGGT CTTGAGCGAT AGAGGTAGGG AGGTGGTCTA CATCAAGACC
GACGAGCCTG AGGCCGTGGA GGCGTGTTGT TCCCCCTCGC AGGTCTTGGC GGCGCCTGTG
GCCGACGCCT TCGCCGCCGC CGGCATCTCC CAGCTCTTTA GGCATCAATA CGACGCGATC
CAGAGCATTA GAGGCGGCAG AGATACCGTC ATCGTCGCAG GGACAGGTAT GGGCAAGACC
GAGGCGTTTC TCGCGCCGTT GCTTGAATCG GCGCTGGAGT CGCCGAGGGG GCCGACGGCG
CTTGTGCTGT ATCCAACTAA AGCCCTGGCT AGAGACCAGC TGTCTAGGTT TAGGAGATTT
GGCGATAGAG TTGGGGTAAG GGTTATGGTG TACGACGGCG ATACGCCGCA GAGGGAGAGG
CGTATAATGT ACGAGACCCC GCCGCACATA ATAATAAGCA ACCCAGACAT GGTGAGCATC
GCCCTTATGC ACGTGGCTAA GTTCAGAGAG CTCGTCAAAC GGCTTAGATA CGTCGTGTTA
GACGACTTCC ATGTCTACAG CGGGGTATTC GGCTCACACA TGTACTATCT GCTGAGGCGG
CTGAGGCGGT TCACGAGACC CCTCTTCATC GCCACAAGCG CGACGGTTGG AAACCCGGCC
GAGTTCGCCC AAACGCTGTT CGACAGCGAC AGGATCAACG TCGTGTGGGG ACCCCTGGGG
AGGAGGGGTA GGCTTATACA GGCCTTGGTA AGGCCCAAGT TTAGGTCTAA GTGGGCCGAG
GCGGCGCGCC TCGCCTCATT GTGTATAGAG GGCGGGCTTA AATGCATCGT TTTCACCGAC
AGCCACAGAT ACAGCGAGGT GATATTCAGG GCTCTGAAGA TGGGGGGCCG GGGGGACAGG
GTGGCCCTCC ACAGAGCTGG GCTTGACCCC GAGGAGAGGA GGGGAGTTGA GGAGGCCTTC
AAGAGAGGCG ATGTCAACGT GGTGATTTCG ACTCCCACGC TGGAGCTCGG GGTAGACATA
GGCGATGTGG ACGCCGCCGT GTTGGCCTCC ATACCGCCCT CCTACAACAG ATATCTGCAA
CGCGTCGGCA GAGTTGGCAG GAGGGGCCAA ACCGGTTATA TAATCCAGAT CCTCGGCAAC
GACCCCATCT CCCAGTACTA CCGCAACTAC CCACACGAGT TTTTCTCCAG GTCGCCTGAG
CCGCTTGGAT TCGAAAGGGA GAACGAAGAC GTGGCGGCTC TACATCTGCT CGCAGCCGCC
TCAGATATGC CGCTTAGGTT GGGAGAGCTG GGGCATTTCG AACAGAGGCT GGCTGAGGAG
CTCTTAGGCA GAGGTCTATT AAGGCGGGTG GGGAGCTACC TTAGGATCAC GCCTGGGGGG
AGGGAGGCGC TGTCGGCGCT GAGCCTCAGA GGGTCGCCCC ACGTGGTTAA GATCAAGACC
GGGGACGGGA GGGTGATAGG CGAGAGGGAG CTACCGCTGG CGCTGTATGA GCTACATCCA
GAGGCGATTT ATATGCACGG GGGGAGGACC TACGTCTCGA AATCTCTGGA TCTCTCCAGG
AGGACGGCGG TGGTCGAGCC GGTAGACGCC GAGGATCTGG TAACACAAGC GCTGGAGGAC
ATGGAGCCAA ACGTAGTGGA AATATACGAG GAGGGGGCTG TAGAGGGCGT GCCTTATCAA
TTCGGCCGCC TCAAGATAAA GATAACGGTG TACGGCTACG CCCTCAAGCG GTTCACGACC
GAGGAGACCT TGGGCGAGTA CAACATAGAG CCTCTCTCTT ACGAGTTCGA GACCAAGGGC
GCCGTCTTCT ACATGCCCCA CGTGCGCTTC AGCTCAGACG ACACGATAGA CTGGGAGGCG
AGGGCGAAGG GCTACCACGC CACAGAACAC GTGTTGATCT CGGCCACGGA GATCGCGGTG
GGCGCTTCAA AGACCGACCT AGGCGGCATC AGCTACCCCG ACGGCGTGAT TGTGATATAC
GACTCACACG TGGGAGGCAA CGGAACCACC CGTCTCCTGC TGAAGAACTT CAGGCGTGTC
GCGGAGGTCG CGCTTAAGAT TGTCAAGGGT TGCGACTGCC TAGACGGGTG CCCCAAGTGC
GTCTATTCGC CATACTGCGG GAACAACAAC AAGATGCTGT CGCGGAGAAA CGCGATCAGG
GTTCTAGAGG CGGTGCTTAA CAGATCGGGG GCGCCCGCGG TGAGGGAGAT CCCCAAGGCG
GGTGCTCTAG CCTAG
|
|---|
| Protein sequence | MNFLEEVLSD RGREVVYIKT DEPEAVEACC SPSQVLAAPV ADAFAAAGIS QLFRHQYDAI
QSIRGGRDTV IVAGTGMGKT EAFLAPLLES ALESPRGPTA LVLYPTKALA RDQLSRFRRF
GDRVGVRVMV YDGDTPQRER RIMYETPPHI IISNPDMVSI ALMHVAKFRE LVKRLRYVVL
DDFHVYSGVF GSHMYYLLRR LRRFTRPLFI ATSATVGNPA EFAQTLFDSD RINVVWGPLG
RRGRLIQALV RPKFRSKWAE AARLASLCIE GGLKCIVFTD SHRYSEVIFR ALKMGGRGDR
VALHRAGLDP EERRGVEEAF KRGDVNVVIS TPTLELGVDI GDVDAAVLAS IPPSYNRYLQ
RVGRVGRRGQ TGYIIQILGN DPISQYYRNY PHEFFSRSPE PLGFERENED VAALHLLAAA
SDMPLRLGEL GHFEQRLAEE LLGRGLLRRV GSYLRITPGG REALSALSLR GSPHVVKIKT
GDGRVIGERE LPLALYELHP EAIYMHGGRT YVSKSLDLSR RTAVVEPVDA EDLVTQALED
MEPNVVEIYE EGAVEGVPYQ FGRLKIKITV YGYALKRFTT EETLGEYNIE PLSYEFETKG
AVFYMPHVRF SSDDTIDWEA RAKGYHATEH VLISATEIAV GASKTDLGGI SYPDGVIVIY
DSHVGGNGTT RLLLKNFRRV AEVALKIVKG CDCLDGCPKC VYSPYCGNNN KMLSRRNAIR
VLEAVLNRSG APAVREIPKA GALA
|
|---|
| |