| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tneu_1333 |
|---|
| Symbol | |
|---|
| ID | 6165203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermoproteus neutrophilus V24Sta |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010525 |
|---|
| Strand | - |
|---|
| Start bp | 1192683 |
|---|
| End bp | 1195421 |
|---|
| Gene Length | 2739 bp |
|---|
| Protein Length | 912 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641668488 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001794705 |
|---|
| Protein GI | 171185786 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.20041 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.364429 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTTTTCG ATCTGTTGCA CCCCCGGCTA CAAGCGGCGA TCAGGGAGCT GGGCTATCTG
GAGCCCACGC CGGCGCAGGA GAGGGGGATA CCCGCAGTTT TATCGGGTTC CCACGTTTTA
ATAATCGCGC CCACCGGCTT TGGGAAAACA GAGGCGGCGC TCTTCCCCAT AATTTCCAGG
ATGTTGGAGG GGGGCGGCCG CGCGCTCTAT ATAACGCCGT TGCGCTCGCT AAACCGCGAC
CTCCTCCGCC GGCTCTACGC GCTTGCAGAA GCCCTTGGGC TATCGATGGC GGTTAGACAT
GGGGATACCC CTGAGTCTGA GAGAAGATTG CTTGCGACAC GTCCGCCGGA TATCTTAATT
ACGACGCCGG AGTCCCTCCA GATACTTCTC CTACACCGCC GCCTGCGGCG GAGCCTAAGC
TCCGTGCGTT TCGTAGTTGT AGACGAGGTA CACGAGCTCG TGGGGAGCAA GCGAGGTGTA
CAGCTAGCGG TGGGGCTTGA ACGTCTCGTG GAGCTGGCGG GCGAATTCCA GAGGGTTGGG
CTCTCCGCGA CGGTGGGCAA CCCGGCGCTT GTGGCTGAGT TCCTAGGGGG CGTCGGTCGA
AGGGTGGAGA TCGTCGACGT GTCGGGGGAG AAGAAGTTCG AGGTAGAGGT GGTTTTGCCT
ACGCCGACCG ACGAGGACTA CATAGACGCC GAGAAGCTAG ACGCGACGCC CGAGGCCGTT
GCCAGAGTTA AGAAAGTCGC CGAGTTTGTG AAATCCTCGG GAGGCGCAGT GTTGGTTTTC
ACGAATACTA GAGACGGCGC TGAGTTCTTG GCGTCAAGGC TGAGGAGCCT CCTAGGTTCA
GTGGTTGAGG TCCACCACTC GTCTCTGTCT AGGGAGCACA GGGTTTCCGT CGAGGAGCGG
CTCAAGAGAG GCGAGCTGAA GGCCGTGGTT GCCACCTCCA GCCTAGAGCT GGGGATCGAC
ATAGGCGAGG TTGACCTCGT TATTCAATAC GGCTCGCCTC GCCAGGTGGC TAAGCTGATC
CAGAGAGTAG GCAGAAGCGG CCACAGGCTG GGACAGATCT CGCGGGGAGT CGTAGTGGCG
TCCGATCTAG AGGACATGCT GGAGTCTGAG GTCATATCCG CCATGGCCCT GGCGCGTTTG
ATAGTAGACG ATGTGGAATA CCACGAAAAC GCGCTTGACG TCCTCGTGCA CCAGATCGTC
GGCATAGCGC TGGAGGCTAG AGTAGAGGGG AGAGATATCG ACGTTGGATA CGTCATGCGG
GTGGTGAAGA GGGCCCACCC CTACAGGAAC TTGACCGAGG ACGACCTCAA GCTCGTCCTC
GACTTCGCGG AGAGACATAG GTTGCTGAGG GGGCTGAGGC CCAGGAGGGG AAGCGTGCGT
TACTACTACG AGGGGGTGTC CACGATACCA GACGAGAAGA GCTATAGGGC GGTGGACGAG
ACCACCGGCA GAGTCGTGGG GCAACTAGAT AGGGAGTTCG TATACGCTAT TGAGCCAGGC
ACTAAGATTG TGTTGTCGGG GAGGGTGTGG GTCTTTTCCA GGAAGGAAGG CGAGACGGTG
TATCTATACC CCGATTTCGA CATCACGGGA GCCCTCCCCT CGTGGATAGG CGAGCAGATA
CCGGTCCCGC GGCAGGTGGC ACAGGAGGTA TGCACAAAGC GTGCAGATCT CCTCAGGGAG
GCTCTAGAGG GCCGGGGCGA TCTGGAGGCG GATCTCGAAG GTCTAGAGCC GGATCTCGTG
CCGATGTCGG ACAGATTACA TATACACATC GTTGGTGGGA AATACGCCGT ATTGCACAGT
TGCCTAGGGT CTAAGGGTAA CGAGGCGCTG GGTCTCTACC TATCCCACGC CCTCTCGGGG
TACGTGGGAC CGGTCGGCTA TAGGGCAGAC GCCTACAGAG TCCTGCTCAT CTTTAGAGAC
CACGTGCCCG TAAACGCGCT CGAGGAGATG CTTAAGAGAC CCCCCGAGTT CATCTTTAGA
ACGTTGAGAA ACGCCGTGAA AAGCTCCAGG ATGTTTAGGT ATAGATTTCT CCAAGTGGCT
AGGAGGGTTG GTCTAGTGTC GAAGGAGGCG GAGGATGTCC CGTCTAAGTT AGTAGACGTA
TATATGGACG ACGTACCTGG GATAGAGACG TTGAACGAGA TCTTTGTGGA GAAGCTGGAT
GTGAAAGCGT TGCTGGATCT TGTGGAGAGG ATTTCCGGGG GAAAGCTACA GATCGTGGTG
AGGCGTTTGG CTAAGCCCAC ATTGTTGGAG AGGCCCATTT TAGAAGAGGC GCTTAGGCTG
GACTTCACCT TCAGAGGGCT TTCAAGGGAG ACCCTCGCCG ATTTGGCGAG GAAGAGGATA
TTGAACAAAT TCGCAACTCT TCTGTGTCTC AACTGCGGCT GGACTTTCAC AGCCCGCGCG
TCAATGATCC CGGAGGACGT CAGCTGTCAG AGGTGCGGGA TGAGGGCTCT GGCCGTCGTG
AAGGGGGTGG ACCTGGAGAA GGCCCGGCAG GTTTTAAACA AGCACAAGCT TAGGCAGAAG
CTCAGCGCCG AGGAGAGGAG GCTCCTGGAG CATCTACAGC AGAGCGCCTC AATTGTGCTA
GAGCATGGAA AAACCGGAGT CATAATTCAG CTAGCGCACG GCGTTGGCCC AAAAACCGCG
ATTAGAGTGT TAAACAAGGT CTTCGAAGGC GCCGACCTCT GGAGCGCCAT CTTGGACGCC
GAAAGACAGT ATTCCACGAC CAGGGCCTTC TGGGACTAA
|
|---|
| Protein sequence | MVFDLLHPRL QAAIRELGYL EPTPAQERGI PAVLSGSHVL IIAPTGFGKT EAALFPIISR
MLEGGGRALY ITPLRSLNRD LLRRLYALAE ALGLSMAVRH GDTPESERRL LATRPPDILI
TTPESLQILL LHRRLRRSLS SVRFVVVDEV HELVGSKRGV QLAVGLERLV ELAGEFQRVG
LSATVGNPAL VAEFLGGVGR RVEIVDVSGE KKFEVEVVLP TPTDEDYIDA EKLDATPEAV
ARVKKVAEFV KSSGGAVLVF TNTRDGAEFL ASRLRSLLGS VVEVHHSSLS REHRVSVEER
LKRGELKAVV ATSSLELGID IGEVDLVIQY GSPRQVAKLI QRVGRSGHRL GQISRGVVVA
SDLEDMLESE VISAMALARL IVDDVEYHEN ALDVLVHQIV GIALEARVEG RDIDVGYVMR
VVKRAHPYRN LTEDDLKLVL DFAERHRLLR GLRPRRGSVR YYYEGVSTIP DEKSYRAVDE
TTGRVVGQLD REFVYAIEPG TKIVLSGRVW VFSRKEGETV YLYPDFDITG ALPSWIGEQI
PVPRQVAQEV CTKRADLLRE ALEGRGDLEA DLEGLEPDLV PMSDRLHIHI VGGKYAVLHS
CLGSKGNEAL GLYLSHALSG YVGPVGYRAD AYRVLLIFRD HVPVNALEEM LKRPPEFIFR
TLRNAVKSSR MFRYRFLQVA RRVGLVSKEA EDVPSKLVDV YMDDVPGIET LNEIFVEKLD
VKALLDLVER ISGGKLQIVV RRLAKPTLLE RPILEEALRL DFTFRGLSRE TLADLARKRI
LNKFATLLCL NCGWTFTARA SMIPEDVSCQ RCGMRALAVV KGVDLEKARQ VLNKHKLRQK
LSAEERRLLE HLQQSASIVL EHGKTGVIIQ LAHGVGPKTA IRVLNKVFEG ADLWSAILDA
ERQYSTTRAF WD
|
|---|
| |