| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tneu_0997 |
|---|
| Symbol | |
|---|
| ID | 6164806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermoproteus neutrophilus V24Sta |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010525 |
|---|
| Strand | + |
|---|
| Start bp | 888778 |
|---|
| End bp | 890253 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641668150 |
|---|
| Product | CRISPR-associated helicase Cas3 |
|---|
| Protein accession | YP_001794375 |
|---|
| Protein GI | 171185456 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.242255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0349281 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAGGG CGGTGGAGAG GGGGCTTGAG CTGGCGCGCG CGGGCGCTTC AAGGATTGTC
TTGGAGCTTC CGACGGGATA CGGGAAGACC TACGCCGCGC CGCTGTTTTA CAAGGCTCTG
AGGGAGGGGG GTCTCTGCAG TAAGGCGATC CACGTCATGC CCCTGAGGGC TCTCATTAGG
AAGCAGATCG AGAGGTACGC CTCTGCCCAC CCCGATATAA AGTTCGCGTA TCAAGACGGC
GACGTCCTCC TTCGGGATAG GTACGTGAAG GATCCGTACT TCCGCGAGGA GTACGTCCTC
ACGACGCTGG ACTCCTTCAT CCACAACCTG GCGAAGGTCC CCGTCGCAGA GATGTGGAAG
TTCTACAAGT CCGAGAGACC GTCGGTGAGG TACCACATAC CCCTCGCCTA CATCTACCCC
TCGTGTGTCT TTCTAGACGA GGCGCATATG GCAGCTGGCT CCAGGAAAGA GCTCGCCGCA
GTAAAGGCGG CTGTGAGGTT CCTCAAAGAG CTCGGCGTGC CCACCGTCGT CATGTCGGCA
ACTCTTGGCG AGTGGAAGAG GGATGTATTC AAGGGCTTTA GGTTTGTGTC GCTTGGGGAG
AGGGATGAGG AGAGGGGCGG CGACGTCAAA GTCGCCGATC CGGAGTTCGA ACGGCGGATG
TCGAACGTAG CGTACAAGGT GGGGAGGGTT GACAATATAG AGGAGGTGGC GAGGCGTAAG
GCGGAGGAGG GGAAGAGGGT GCTCGTGATA GTTAACGACG TCTGCAGAGT CCAGCGCCTT
TCCGAGACGT TGGGGGCGCC GGCGGTGCAC TCCCTCATGA CGCGGAGAGA CCGCGAGAGG
GCTGAGCGCG AGCTTGATAA GGCTCAGATT GTGGTGGGTA CAGACGCGAT TGGGGCCGGC
GTCGACGTAG ACTTCGACGT GTTGATAACC GAAGCCGACG AGGTGGAGCG GGTCGCGCAA
CGGGTGGGGC GCGTCTGTAG AAACAGGGAG AGCTGCGTAG GCGAGATATA CTTCGTCGGC
GAGGTCGATG AGGAGCTCCT CAAGGTCAAG AACTGGCGCC TCCCGCACAA GCCGGACAGC
TACCTACGCC TCCTCCGAGG GGAGGCCGAG GTAGACGAGA AACACTTCTG GTTTCTGGGA
ACCGTCATGA AGGAGGAAGT GGTGGATACA CACAACTTGA GGGAAAAGTT GCTGGAGGAG
GGCGGCTCCT TCGTCCGCCA CGCCCTGCTG GAGGCGGAGG TGGGGGAGGG GCCCGAGGAG
TCCTTCACAG TTTCGCTGGA CAGGCTGGGA CAGCTGGAGT TTGAGGTGTA TGTTGGAGAG
AGGCGGATTG AGCCGCCCCG TAGCTACGGA GATAGGGAAT TGATGGAGTG GCTTCTTGAC
GTCGTCGATG AGTACGGCGA TGTGCCGAGG ATCCGCGTTG TGAAATACAG AGAGGGGCTT
GGGGCTGTGC TCAAGAAGTG TGGAGAGGGG GTATGA
|
|---|
| Protein sequence | MRRAVERGLE LARAGASRIV LELPTGYGKT YAAPLFYKAL REGGLCSKAI HVMPLRALIR
KQIERYASAH PDIKFAYQDG DVLLRDRYVK DPYFREEYVL TTLDSFIHNL AKVPVAEMWK
FYKSERPSVR YHIPLAYIYP SCVFLDEAHM AAGSRKELAA VKAAVRFLKE LGVPTVVMSA
TLGEWKRDVF KGFRFVSLGE RDEERGGDVK VADPEFERRM SNVAYKVGRV DNIEEVARRK
AEEGKRVLVI VNDVCRVQRL SETLGAPAVH SLMTRRDRER AERELDKAQI VVGTDAIGAG
VDVDFDVLIT EADEVERVAQ RVGRVCRNRE SCVGEIYFVG EVDEELLKVK NWRLPHKPDS
YLRLLRGEAE VDEKHFWFLG TVMKEEVVDT HNLREKLLEE GGSFVRHALL EAEVGEGPEE
SFTVSLDRLG QLEFEVYVGE RRIEPPRSYG DRELMEWLLD VVDEYGDVPR IRVVKYREGL
GAVLKKCGEG V
|
|---|
| |