| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tneu_0579 |
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| Symbol | |
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| ID | 6165689 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermoproteus neutrophilus V24Sta |
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| Kingdom | Archaea |
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| Replicon accession | NC_010525 |
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| Strand | - |
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| Start bp | 529648 |
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| End bp | 530511 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641667732 |
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| Product | CRISPR-associated RAMP Csa1 family protein |
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| Protein accession | YP_001793967 |
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| Protein GI | 171185048 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4343] Uncharacterized protein conserved in archaea |
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| TIGRFAM ID | [TIGR01896] CRISPR-associated protein, Csa1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.000306533 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.121331 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAGGG AGTTTAGACT TGTGAGGGGG CTTAGGGTTG AGGTTGGGGA GGAGTTGAGG
GGTTGGAGAT GGGGGGAGCC TCCTGTGGCG CCTCCGCCGC TTGGGGTGAG GCTTTCGGTT
TCTGAAATCG TCGGCGGAGT TTGTGAATCT AGGCGTGACC TGTACCTGCG GAGGGTCGCC
AAGGTGAGGG TGGAGGCCAA CGGCTCGCTG AAGTTCGGCG GGTATATACA CGAGGTGTTT
AGACGTAGTC TCGTTAGGCT GAGGAGGCTG GTGGAGGAGG GGCTGAGGGG GTGGGATCTC
ATCTCCGCGT TTAAGCCTGA GGAGGTGGCG GCTGAGGCCG CTGCGGCGGT TGGCCACGAG
GCAGATCAGC GGGGGGTCGA GTTGGCGAGG TTTCTGGCGG TGCAGGTGGC GGCTAGGGTA
GACGAGGTGG CGGCGCGGGG GAGCTTCGAC CCCTACATGC TCGCGGCGCG GGCGGTGCCT
CTGCTGGCTG AATACGTGAT CGACGGAAGG CCGCTGGGGC TCACCCTGGT TAGGGCAGAC
GCCCTTTTCC ACAACGTCGT CGTCGAGGTG AAGGTGGGGC CTGAGGACGA TAGACACGCC
TTGGCCCTCG CCGGCTACGC GCTTGCCGTT GAGGCAGACG AGGAGGTCCC CGTCGACGCG
GGGCTGTTGA TATACATCTC CTTCAACGGA GGGGTGAAGG TGAGGGCTAG GCCTGTGGCT
ATCGGCGAGG GGCTGCGGCG GCAGTTCCTC GAGGAGAGAG ACAGACTTAT GGAGTTTCTA
CACTCGGGGG CCGACCCGGG TCTCTCCCCT AGGTGCGACG ACAGATGTGT CTTCTACAGG
TACTGCCATG GAGGTGGTAG TTAA
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| Protein sequence | MFREFRLVRG LRVEVGEELR GWRWGEPPVA PPPLGVRLSV SEIVGGVCES RRDLYLRRVA
KVRVEANGSL KFGGYIHEVF RRSLVRLRRL VEEGLRGWDL ISAFKPEEVA AEAAAAVGHE
ADQRGVELAR FLAVQVAARV DEVAARGSFD PYMLAARAVP LLAEYVIDGR PLGLTLVRAD
ALFHNVVVEV KVGPEDDRHA LALAGYALAV EADEEVPVDA GLLIYISFNG GVKVRARPVA
IGEGLRRQFL EERDRLMEFL HSGADPGLSP RCDDRCVFYR YCHGGGS
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