| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4382 |
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| Symbol | |
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| ID | 6161100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4901216 |
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| End bp | 4903453 |
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| Gene Length | 2238 bp |
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| Protein Length | 745 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641667159 |
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| Product | isocitrate dehydrogenase, NADP-dependent |
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| Protein accession | YP_001793398 |
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| Protein GI | 171061049 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
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| TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000594787 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCCGCTG AAAAAGCCAA GATCATCTAC ACCCTGACCG ACGAGGCGCC CTTGCTGGCG
ACTTATTCGT TTCTGCCGAT CGTGCGCACT TTCGCTGCGC CTGCGGGCAT CGACGTCGTC
GAGTCCGATA TCTCGGTGGC GGCACGCGTG CTGGGTGAAT TCCCCGAGTA CCTGAGCGAC
GAGCAGCGGG TGCCGGACAA CCTGAAGGAA CTCGGCCGGC TCACCCTGCT GCCCGATACC
AACATCATCA AGCTGCCCAA CATCAGCGCG TCGCAGAACC AGTTGATCAC CTGCATCCGC
GAGTTGCAGT CCAAGGGCTA CGCGCTGCCC GACTTCCCCG AGCAGCCCAA GACCGACGAG
GAAAAGGCGA TCCGCCTGCG CTACAACAAG TGCATGGGCA GCGCGGTGAA CCCGGTGCTG
CGCGAAGGCA ACTCCGACCG CCGCGCGCCG CGCGCCGTCA AGGAATACGC CCGCAAGAAC
CCGCACAGCA TGGCCGAGTG GAGCCAGGCG TCGCGTTCGC ACGTCTCGCA CATGCACCAC
GGCGACTTCT ATCACGGCGA AAAGTCGATC ACGCTCGACA AGGCGCGTGA CGTCAAGATG
GAACTGCTCA CCAAGAGCGG CAAGACCATC CTGCTCAAGC CGAAGGTCTC GCTGCTCGAC
CGCGAAGTCA TCGACAGCAT GTTCATGAGC AAGAAGGAAC TGCTGGCCTT CTACGAGAAG
GAGATCGAGG ACGCGCACAA GACCGGCGTG ATGTTCTCGC TGCACGTCAA GGCGACCATG
ATGAAGGTGT CGCACCCGAT CGTGTTCGGC CACTGCGTCA AGATCTTCTA CAAGGACGCG
TTCGCCAAGC ACGCCAAGCT GTTCGACGAG CTGGGCGTGA ACGTCAACAA CGGCATGGCC
AACCTGTACG ACAAGATCGC CACCCTGCCG CAGAGCAAGC AGGACGAGAT CAAGCGCGAC
CTGCACGCCT GCCACGAGAA CCGCCCCGAG CTGGCGATGG TCGATTCGGC CAAGGGCATC
ACCAACTTCC ACTCGCCAAA CGACGTGATC GTCGACGCCT CGATGCCGGC GATGATCCGC
AACGGCGGCA AGATGTGGGG TGCCGACGGC CGCCTGAAGG ACGTCAAGGC CGTGATGCCG
GAGTCGACCT TCGCCCGCAT CTACCAGGAG ATCATCAACT TCTGCAAGTG GCACGGCGCC
TTCGACCCCA AGACCATGGG CACGGTGCCC AACGTCGGCC TGATGGCCCA GCAGGCCGAG
GAATACGGCT CGCACGACAA GACCTTCGAG ATCCCCGAAG ACGGCGTGGC CAACATCACC
GACCTGAACA CCGGCGAAGT GCTGCTGAGC CAGAACGTCG AAGAGGGCGA CATCTGGCGC
ATGTGCCAGG TCAAGGACGC CGCCATCCGC GACTGGGTCA AGCTGGCCGT CAACCGCGCG
CGCAACTCCG GCATGCCGGT GGTGTTCTGG CTCGACGCCT ACCGTCCGCA CGAGGCGCAG
CTGATCACCA AGGTCAAGAT GTACCTGCAC GAGCACAACA CCTCCGGCCT GGACATCCAG
ATCATGAGCC AGGTGCGTGC CATGCGTTAC ACCCTGGAGC GCGTGATCCG CGGCCAGGAC
ACCATCAGCG CCACCGGCAA CATCCTGCGC GACTACCTCA CCGACCTGTT CCCGATCATG
GAACTGGGTA CCAGCGCCAA GATGCTGTCG ATCGTGCCGC TGATGGCCGG TGGCGGCATG
TACGAGACCG GTGCCGGCGG TTCGGCGCCC AAGCACGTGC AGCAGCTGGT CGAGGAAAAC
CACCTGCGCT GGGATTCGCT CGGCGAGTTC CTGGCACTGG CGGTCAGCAT GGAAGACCTC
GGCATCAAGA CCGGCAGCAA CAAGGCCAAG ATCCTGGCTC GCACGCTCGA CGCCGCCACC
GGCAAGCTGC TCGACAACAA CAAGGGCCCG TCGCCCAAGA CCGGCCAGCT CGACAACCGC
GGCAGCCAGT TCTACCTGGC GATGTACTGG GCCCAGGGCC TGGCCGAGCA GACCGAGGAC
CTGGAGCTGC AGGCCCACTT CACCGGCCTG GCCAAGTCGC TGACGGAAAA CGAGCAGAAG
ATCGCCGACG AGCTGAAGGC CGTGCAGGGC CAGCCGGTCG ACATCGGCGG CTACTACTTC
GCCGATCCGC AGAAGGTGAC GGCCGTGATG CGTCCGAGCG CGACCTTCAA CGCCGCCCTG
GCGGCTGCGC AGCTCTGA
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| Protein sequence | MPAEKAKIIY TLTDEAPLLA TYSFLPIVRT FAAPAGIDVV ESDISVAARV LGEFPEYLSD
EQRVPDNLKE LGRLTLLPDT NIIKLPNISA SQNQLITCIR ELQSKGYALP DFPEQPKTDE
EKAIRLRYNK CMGSAVNPVL REGNSDRRAP RAVKEYARKN PHSMAEWSQA SRSHVSHMHH
GDFYHGEKSI TLDKARDVKM ELLTKSGKTI LLKPKVSLLD REVIDSMFMS KKELLAFYEK
EIEDAHKTGV MFSLHVKATM MKVSHPIVFG HCVKIFYKDA FAKHAKLFDE LGVNVNNGMA
NLYDKIATLP QSKQDEIKRD LHACHENRPE LAMVDSAKGI TNFHSPNDVI VDASMPAMIR
NGGKMWGADG RLKDVKAVMP ESTFARIYQE IINFCKWHGA FDPKTMGTVP NVGLMAQQAE
EYGSHDKTFE IPEDGVANIT DLNTGEVLLS QNVEEGDIWR MCQVKDAAIR DWVKLAVNRA
RNSGMPVVFW LDAYRPHEAQ LITKVKMYLH EHNTSGLDIQ IMSQVRAMRY TLERVIRGQD
TISATGNILR DYLTDLFPIM ELGTSAKMLS IVPLMAGGGM YETGAGGSAP KHVQQLVEEN
HLRWDSLGEF LALAVSMEDL GIKTGSNKAK ILARTLDAAT GKLLDNNKGP SPKTGQLDNR
GSQFYLAMYW AQGLAEQTED LELQAHFTGL AKSLTENEQK IADELKAVQG QPVDIGGYYF
ADPQKVTAVM RPSATFNAAL AAAQL
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