Gene Lcho_4377 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4377 
Symbol 
ID6161030 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4895549 
End bp4896250 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content70% 
IMG OID641667154 
Productphospholipase/carboxylesterase 
Protein accessionYP_001793393 
Protein GI171061044 
COG category[R] General function prediction only 
COG ID[COG0400] Predicted esterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.234043 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAGGCC GCAGCCGGCT CAGCCGCTAT CCTGAGCGCA TGGCTCTCGA AACCCTTGAA 
CTCCAGTCCG GCCCCAACCC GGTGGCCAGC ATCGTGGTGC TGCACGGCCT GGGCGCCGAC 
GGCTCCGACT TCGTGCCGAT CGCCGAACAG CTCGACCTGT CGGCGATCGG CGACGTGCGA 
TTCGTGTTCC CCGACGCGCC GGTGCGCCCG GTCACGGTCA ACGGCGGCTA TCAGATGCGC 
GCCTGGTACG ACATCTTCAA CGCCGACCTG GTGCGCCGCG AGGACGAAGC CGGCCTGCGC 
GCCTCGCTGG CCGACGTGCA GGCGCTGCTC GACCGCGAGG CCGCGCTCGG CATCGCGCCG 
CAGCGCACCG TGCTGATGGG CTTCTCGCAA GGCTGCGCGA TGACCCTGCT GGCGGGCCTG 
CGCGCGCCGC AGCGTCTGGC CGGACTGGCC TGCCTGTCGG GCTACCTGCC GCTGGCGGCC 
CGCACCGCCG CCGAACGCAG TGCCGCCAAC CAGGACGTGC AGATCTTCAT GGCGCACGGC 
CGCTTCGACC CGATCGTGAC GATCGACCGC GGCCTGGCCT CATGCGCCAC GCTGGCCGCG 
CTCGGCTACG CCATCGACTG GCGCGAGTAC CCGATGGAAC ACTCGGTCTG CGAAGAAGAG 
ATCGACGACC TGAACCGCTG GCTGCTGAAG GTGCTGGCCT AG
 
Protein sequence
MVGRSRLSRY PERMALETLE LQSGPNPVAS IVVLHGLGAD GSDFVPIAEQ LDLSAIGDVR 
FVFPDAPVRP VTVNGGYQMR AWYDIFNADL VRREDEAGLR ASLADVQALL DREAALGIAP 
QRTVLMGFSQ GCAMTLLAGL RAPQRLAGLA CLSGYLPLAA RTAAERSAAN QDVQIFMAHG 
RFDPIVTIDR GLASCATLAA LGYAIDWREY PMEHSVCEEE IDDLNRWLLK VLA