Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4376 |
Symbol | |
ID | 6161029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4893573 |
End bp | 4895552 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641667153 |
Product | superfamily I DNA/RNA helicase |
Protein accession | YP_001793392 |
Protein GI | 171061043 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.568868 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCTTT CCGACATCCG CTCGGCCCTC CGCGACGAGC TGGAGGCCAC GCCCGAGCAC TACGACTTCA AGGTGCTCGC CAGCGAGCGC GACGGCCATC TCTGGCGCGT CACGCTGCAG CCCGGCCACG CCTGGGCCGA GGGCCGGTAC GCCGCGCAGC TGATGCTCGA CGACTCGTTC GACGGCTCAT CGGCCTGGTG GGGCGGCCCG CCCAAGGGCC ACGCCAGCGT GCTGGCGATC GCGCCCGAGG ACGACCAGAT CATCCTGAAG GACGCCAGCG CGCCGCCGCC CGGCCCCGAC CAGCTGATCC GCCTCTACCC GCCGCGTTTC CTCAACGCCC TGGCCGACTG CTGGCGCGAC GACGACTGGG CCGGGCTCGC CTGGGCCAGC CTGCGTGACC TGGCCGCACC GAGCCCGGTC GCGACCGAGC GCCTGGACGG CGCCGCCTTC GGCTGGCTGC GCCCGGCGCA GCGCCAGGCG CTGCAGCTGG TCGGCCAGTC GAGCAGCTTT CTGTGGGGTC CGCCCGGCAC CGGCAAGACC ACCGCGCTGG GCGTGCTGCT GGCCGAGTAC CTGCACGTCA ACGCCGGCGC GCGCGTGCTG CTGCTGTCGA CCACCAACCA CGCGGTCGAC CAGGCCGTGC TGGCGGTCGA CAAGGCGCTG CAGCAGAAGC GCCGCGAGGG TCTGCGCGGC AGCGTCAAGC GGCTCGGCAC GCGCTTCGTG GCGAGTGCCT ACCGCGGCCG CGAGCACCTG CTGCCGGTGT TCGATCCGGA TCTGATCGCC CGCCTGTCAC GCGCCGAAGC GGCGCGCCCG CCGACCTCCG ATCTGCAGGC CTACAGCCGC TGGTCGGAGC GGGTCGAGGG CCTGCGGCTG CAGATGCGCG CCGAGTCGCT ACGGGTGCTG CGCAGCGCCC GGCTGGCGGC GATGACGACC ACCCGCGCCG CCTTCACGCT CAAGACGCTG CGCGAGCTGC CGCCGTTCGA CCTGGTGGTG TTCGACGAGG CCAGCCAGGT CAGCCTGGCG CACACGCTGG CGCTGATCCC GCTCGGCCGG GCGCGGCTGT TCGCGGGCGA TCCGCAGCAG CTCGCGCCGG TGGTGCGCAG CGCCAGCCGC GAGGCGCGCC GCTGGCTCGG CCGCTCGCCG TTTGCCGAGA AACCGCGTGG CGGGCCGTCG GTCTGCCTGC TCGACGAGCA GTCGCGCATG GCCGCGTCGA TCTGCGATCT GGTCAGCCAC CTGTTCTACG ACGGCGAGCT GCGCGTGGCC GCCGATGCGC GGGCCGACCC GGCGTGGCTG GCGACGCGTA CGCGGCCGTT CGGCGGCATC GAGGCCGATC GGCACGTGCA TGTCGAGACC GTGGCGCAGG ACGGCGGCTG GTCGGCGGCA CACCGCGGGC CGGTGCGGGT TGCGTCCGCC GAACACATCG CGCAACGGGT CGCGCAGGCG CTGGCGCAAG GCGAGCTGGC CGCGCACGAG CTGGTGCTGC TGACGCCGTT TCGGGCCCAG CGCGCGCTGA TCCGCCAGCG GCTGGCGGCG CACGGCGTGT TTCAGGTCAA GGTCAGCACG GTGCACCGCG CGCAGGGCAG CGAGGCGGCG GTGGTGATCT TCGACCCGGC CGACGGCGCG CAGCCGTTCC TGCGCACCGA GGAGGCCGGG CGGCTCATCA ACGTGGCGCT CAGCCGGGCG CAGGCCAAGG TGGTGGTCTA TCTGTCGGGC GCCGACGCGG CCAATCCGGT GCTGGCGCAG ATCGTCAACC GGCTGCGGCT GGCCGGCGAT GCGCGGCGCG CCACGCCGAT CGGCGAGCTG GCGTTGCGCT CGGATTTCCC GGCTTGCGCG GTGGGCCTGC GGGTGGCGAT CGGGCGCCAT GCCGGCGAGG TGTCACGCGC CTCGCCCGAT GGCCGGCAAC TGTGGATGGT CAACGAGGCG AGTGGCGCCG AACAGCTGTT CGACGCGGCC TTCCTGCGCC GCAAGGCGGC TGGCGCCTAG
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Protein sequence | MSLSDIRSAL RDELEATPEH YDFKVLASER DGHLWRVTLQ PGHAWAEGRY AAQLMLDDSF DGSSAWWGGP PKGHASVLAI APEDDQIILK DASAPPPGPD QLIRLYPPRF LNALADCWRD DDWAGLAWAS LRDLAAPSPV ATERLDGAAF GWLRPAQRQA LQLVGQSSSF LWGPPGTGKT TALGVLLAEY LHVNAGARVL LLSTTNHAVD QAVLAVDKAL QQKRREGLRG SVKRLGTRFV ASAYRGREHL LPVFDPDLIA RLSRAEAARP PTSDLQAYSR WSERVEGLRL QMRAESLRVL RSARLAAMTT TRAAFTLKTL RELPPFDLVV FDEASQVSLA HTLALIPLGR ARLFAGDPQQ LAPVVRSASR EARRWLGRSP FAEKPRGGPS VCLLDEQSRM AASICDLVSH LFYDGELRVA ADARADPAWL ATRTRPFGGI EADRHVHVET VAQDGGWSAA HRGPVRVASA EHIAQRVAQA LAQGELAAHE LVLLTPFRAQ RALIRQRLAA HGVFQVKVST VHRAQGSEAA VVIFDPADGA QPFLRTEEAG RLINVALSRA QAKVVVYLSG ADAANPVLAQ IVNRLRLAGD ARRATPIGEL ALRSDFPACA VGLRVAIGRH AGEVSRASPD GRQLWMVNEA SGAEQLFDAA FLRRKAAGA
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