Gene Lcho_4370 details

Gene Information

• Locus tag: Lcho_4370
• ID: 6161180
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4887215
• End bp: 4889119
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641667147
• Product: radical SAM domain-containing protein
• Protein accession: YP_001793386
• Protein GI: 171061037
• COG category: [C] Energy production and conversion
• COG ID: [COG1032] Fe-S oxidoreductase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 37
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCGTCCC AACCCGTTCG TGTCCTGTCC GTCATCGCGC CGATGACGCA GCTCAACACC 
CCGTATCCGT CGACCGCCTA CCTGACCGGC TTCCTGCGCT CGCGCGGGGT CGACGCGGTG 
CAGGAGGATC TGGCGCTGGC GCTGGCGCTG AAACTGCTGT CGCGCGACGG CCTGGCCAGC 
GTGCACGCGC GCATCGCCAC GCTGCCCGCC GCCAAGCGCA CGCCGCGGGT GCAGGCCTTC 
GAGGCCGACT ACGCCCGTTA CGCCGCCACC ATCGCGCCGA CGCTGGCGTT TCTGCAGGGC 
CGCGACGCCA CGCTGGCGCA CCGCATCTGC AGCCGCGCCT TCCTGCCCGA AGGCTCGCGC 
TTCGCGCCGC TCGATGCCTT CGAGGACGCC GACGGCAGCG GCCCGCTCGC CTGGGCCTTC 
GGCGCGCTCG GTGCGCAGGA CCACGCCCGA CACCTGGCCA CGCTGTACCT GAACGACATC 
GCCGACGTGA TCCGCGAGGC GGTCGACCCG CGTTTCGAGT TCGTGCGCTA CGCCGAGAGC 
CTGGCGCTCA GCCAGCCCAC CTTCGACCCG CTGGCCGATG CGCTGGCGGC GCCGCCCACC 
CTCGTCGACG AACTGCTGCG CGAGCTGACG CTGGCCGCGA TCGAGCGCCA CCGGCCGACG 
CTCGTGCTGG TGTCGGTGCC GTTCCCGGGC GCGGTCTACG CGGCCTTCCG CATCGCGCAG 
GCGATCAAGG CGATCGACCC GACGATCGTC ACCGCGCTGG GCGGCGGCTA CGTCAACACC 
GAGCTGCGCG AGCTGACCGA GCCGCGTGTG TTCGAGCACT TCGACTACCT GACGCTCGAC 
GCTGGCGAGC GCCCGCTGCT GGCGCTGCTC GAACACCTCG ACGGCAAGCG CTCGCAGACG 
CGCCTGGTGC GCACCTTCGT GCGCCAGGAC GGCGCGGTGA AGTACATCAA CTTCGTCGAG 
CCCGACGTTG CGTTCGAGGA CGTCGGCACG CCGACCTGGG ACGGCCTGCC GCTGGACCGC 
TATCTCAGCC TGCTGGACAT GCTCAACCCG ATGCACCGGC TGTGGAGCGA CGGGCGCTGG 
AACAAGCTGA CCGTGGCGCA CGGCTGCTAC TGGAAGAAGT GCAGCTTCTG CGACGTCAGC 
CTCGACTACA TCTCGCGCTA CGACACGGCG AGCGCACAGA CGCTGGTGAA CCGCATCGAG 
ACCATCGTCA ACGAGACCGG CCAGACCGGC TTCCATTTCG TCGACGAGGC GGCGCCGCCG 
AAGTCGCTGA AAGCGCTCGC CGCCGAACTG CAGCGCCGCC AGCTGGGCAT CAGCTGGTGG 
GGCAACATCC GCTTCGAGAA GAGCTTCACG CCCGAGCTGT GCCAGCAGCT TGCCGACAGC 
GGCTGCATCG CGATCTCGGG CGGGCTCGAA GTCGCGTCGG ACCGCCTGCT GACGCTGATG 
AAGAAGGGCG TGTCGGTCGA TCAGGTGGCG CGTGTCACCA AGGGTTTTGC CGACGCCGGC 
ATCCTGGTGC ATGCCTACCT GATGTACGGT TTCCCGACCC AGACCGCGCA GGACACGGTG 
GACGCGCTCG AATACGTGCG CCAGCTGTTC GAGCAGGGCT GCATCCAGTC GGGCTTCTTC 
CACCGCTTTG CCTGCACCGT GCACTCGCCG GTGGGCCAGG CGCCGCAGGA CTACGGCGTG 
ACGCTGCAGC CGCTGCCGCC GGTGAGCTTC GCCAAGAACG ACATCGGCTT CATCGACCCG 
ACCGGCACCG ATCACGACGC GCTCGGTGTC GGCCTGAAGA AGGCGCTCTA CAACTACATG 
CACGGCATCG GGCTGGACGA GGACGTGCGC GCCTGGTTCG ACTTCCCGGT GCCGAAGTCG 
CGGGTCGGGC GCAACCGCAT CGCCAAGGCC TTGGCCGGCG CCTGA 

 

Protein sequence

MPSQPVRVLS VIAPMTQLNT PYPSTAYLTG FLRSRGVDAV QEDLALALAL KLLSRDGLAS 
VHARIATLPA AKRTPRVQAF EADYARYAAT IAPTLAFLQG RDATLAHRIC SRAFLPEGSR 
FAPLDAFEDA DGSGPLAWAF GALGAQDHAR HLATLYLNDI ADVIREAVDP RFEFVRYAES 
LALSQPTFDP LADALAAPPT LVDELLRELT LAAIERHRPT LVLVSVPFPG AVYAAFRIAQ 
AIKAIDPTIV TALGGGYVNT ELRELTEPRV FEHFDYLTLD AGERPLLALL EHLDGKRSQT 
RLVRTFVRQD GAVKYINFVE PDVAFEDVGT PTWDGLPLDR YLSLLDMLNP MHRLWSDGRW 
NKLTVAHGCY WKKCSFCDVS LDYISRYDTA SAQTLVNRIE TIVNETGQTG FHFVDEAAPP 
KSLKALAAEL QRRQLGISWW GNIRFEKSFT PELCQQLADS GCIAISGGLE VASDRLLTLM 
KKGVSVDQVA RVTKGFADAG ILVHAYLMYG FPTQTAQDTV DALEYVRQLF EQGCIQSGFF 
HRFACTVHSP VGQAPQDYGV TLQPLPPVSF AKNDIGFIDP TGTDHDALGV GLKKALYNYM 
HGIGLDEDVR AWFDFPVPKS RVGRNRIAKA LAGA