Gene Lcho_4343 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4343 
Symbol 
ID6164041 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4860772 
End bp4861428 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content70% 
IMG OID641667120 
ProductGntR family transcriptional regulator 
Protein accessionYP_001793359 
Protein GI171061010 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATCGA CGGAATCGAT GGAATCGAGC CTGGGCGCGC GTCACTCGCC GCTCACGCAT 
CTGGTGGTCA AGGAGATCCG CGAGCGCATC CTGAGCGGCG CCATCGCCGC CGGTGAGCGC 
CTGGTCGAGG GCCGACTGTC GGTCGAGCTG GGCGTGTCGC GCATGCCGGT GCGCGAGGCC 
TTGCGGCAGC TCGCGGCCGA GGGCCTGGTG ACGATCGAGC CGCGCCGCGG CGCCTCGGTC 
ACGAGCTTTT CCGACGACCA GATGCGCGAG CTGGTCGAGG TGCGCGCCAC GCTCGAGGCG 
CTCAACGCCA AGCTCGCCGC CAAGCGCCAC GACCCGCAGC AGATCGCCCG TCTCGAGAAG 
ATCCTGGCCG ACGGCGCGCG GGTGGCCGAC CTGAACGATC CGGTGGCGGT GACCGAGTTC 
AACTCGCTGT TTCACGACAC CCTCGGTGAC ATCGCCGCCA ACTCGGTGCT CAAGGACCTG 
ATGCGCTCGC TGCGTGACCG CACCGCGCTG CTGTTCGCGC CGCTCAACCG CAACCGCGGC 
CCGCAGAACT GGCAGGAGCA CGCCGCCATC CTGCGCGCGG TGATCGCCGG TGATGCCGAG 
CTGGCCTCGC TGCTGGCGGC GCGCCATGTC TACAGCGCCG CGCGCATGGA GCCCTGA
 
Protein sequence
MESTESMESS LGARHSPLTH LVVKEIRERI LSGAIAAGER LVEGRLSVEL GVSRMPVREA 
LRQLAAEGLV TIEPRRGASV TSFSDDQMRE LVEVRATLEA LNAKLAAKRH DPQQIARLEK 
ILADGARVAD LNDPVAVTEF NSLFHDTLGD IAANSVLKDL MRSLRDRTAL LFAPLNRNRG 
PQNWQEHAAI LRAVIAGDAE LASLLAARHV YSAARMEP