Gene Lcho_4339 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4339 
Symbol 
ID6164005 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4854954 
End bp4856756 
Gene Length1803 bp 
Protein Length600 aa 
Translation table11 
GC content74% 
IMG OID641667116 
Producthistidine kinase 
Protein accessionYP_001793355 
Protein GI171061006 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCGA CCCCGATCGC CTCGCCGGCA CCTGCACGCC GCCGGATCGG CCGCAGCACC 
CGCCGCGTGC TGGGCTGGGG CGGCGCGCTG CTGCTGATGG CGGCCGCGGC GCTGACCGGC
CACACGCTGT CGATGCGCGC CGGCCTGGCG CGCCTGGCCG AAGCCGCGCA GCACCGGCTC
GACCTGGTCG CCACCGGCCT GGCCAGCGAC CTGGCGCGCT TCGACTACCT GCCCGCGCTG
CTGGAGATCA CGCCCAGCGT GGCCGCGCTG CTCGACCAGC CCGACGACGC CGCGCTGCGT
GATCAGGCCA ACCGCCAGCT GCAGCGCATC AACGCCACCG CCGGCGCCGC CAACCTCTAC
GTGACCGACA CCGTCGGGCG CTGCCAGGCG GCGTCCGACT GGGAGGATCC CGGCACGCCG
ATCGGCGCCG ACCTGTCGTT CCGGCCCTAT GTGCGCGACG CGCTCGAACA CGGCCGCGGG
CGCTTCTACG GCGTCGGCGT CACCAGCCAC CGGGCCGGCT ACTACCTGTC GTACGTGCTG
ATGCAGCAGG GCCGCCAGCG CGGCGTGGCC ACCGTCAAGG TCTCGCTCGA AGCGGTCGAG
CCCTCATGGC GCAAGCTGCC CGGCGAGGTG CTGCTGGCCG ATCAGCGCGG CGTCGTCATC
CTGTCGACCC GCGAGGAGTG GAAATACCGG CCGCTCGCGC CGTTGTCGAC GCAGGTGCGC
CAGGAACTGG CCGGCAGCCG CCCCTACGGC GACGCACCGC TGGTGCCGCT GGCGATCGGC
CACGACCGTT ACCGGCGCTC CGAGCGCCTG CTCGCGCCGG TCGGCTGGCG CCTGATCGTG
CTCGACGAGC TTGCACCGGT GCGTGCCGGC GCCCGCACCA TGGCCGTCAC CGCCGCGCTG
GCCAGCGCCG TGCTGCTGCT GATCGCCACG CTCGCGCTGC AACGCCAGCG CGCGCTGCGA
CAGCGCCTCG CCAACCAGGC CGCGCTGCAG GCCGCACACG ACAGCCTGGA GGCCAAGGTG
GCCGAGCGCA CCGCCGATCT GCGCGCTGCG CAGGACGAGC TGGTGCACGC CGGCAAGATG
GCCGCGCTGG GCCAGATGTC GGCCGGCCTG GTGCACGAGA TGAACCAGCC GCTCGGCGCC
ATGCGCACGC TGTCCGACAA CGCCTGCCTG CTGCTCGAAC AGCAGCGCAC GGCCGACGTG
CAGGCCAACC TGCAGCGCAT CGGCCGCATG GTCGACCGGC TCGGCCGGCT GACCGGCCAG
CTCAAGGCCT TCGCCCACAA GGCCGCTCCG GCGCTCGAAC CGGTAAACCT GCAGCGCGCC
ATCGCCAACG CGCAGTTCCT GATCGCGCAA CGGCTGCGCG AGCAGGCCGT CGAGCTCGAC
GTGTCGGTGC AGCCCGCCGG CCTGGCCGCG CTGGCCGAAG AGACCCGGCT CGAACAGGTG
CTCGTCAACC TGATGGGCAA CGCCATCGAC GCGATGGCCG CGGCGCCCCC GGGATCGCCG
CGCACGCTGC GCATCGAGGC CGCAGCCGGC GCCGCAGGCC GCTGCGTGAT CCGCGTGCGC
GACAGCGGCC CGGGCATCCG CGCCGACATC CTGGCGCGCC TGTTCGAGCC TTTCGTCACC
AGCAAGCCGG CCGGCGCCGG CCTCGGCCTG GGCCTGATGA TCTCGGCCCA CCTCGCGCGC
GAACTGGGCG GCACACTCGG CGCCCACAAC GTCGACGGCG CGGGCGCCTG CTTCGTCATC
GACCTGCCGA TCCCCACCGC GCCGGAAACC GCCGCGCAGC CGGCGCCCCA AGCCCACGAG
TGA
 
Protein sequence
MTSTPIASPA PARRRIGRST RRVLGWGGAL LLMAAAALTG HTLSMRAGLA RLAEAAQHRL 
DLVATGLASD LARFDYLPAL LEITPSVAAL LDQPDDAALR DQANRQLQRI NATAGAANLY
VTDTVGRCQA ASDWEDPGTP IGADLSFRPY VRDALEHGRG RFYGVGVTSH RAGYYLSYVL
MQQGRQRGVA TVKVSLEAVE PSWRKLPGEV LLADQRGVVI LSTREEWKYR PLAPLSTQVR
QELAGSRPYG DAPLVPLAIG HDRYRRSERL LAPVGWRLIV LDELAPVRAG ARTMAVTAAL
ASAVLLLIAT LALQRQRALR QRLANQAALQ AAHDSLEAKV AERTADLRAA QDELVHAGKM
AALGQMSAGL VHEMNQPLGA MRTLSDNACL LLEQQRTADV QANLQRIGRM VDRLGRLTGQ
LKAFAHKAAP ALEPVNLQRA IANAQFLIAQ RLREQAVELD VSVQPAGLAA LAEETRLEQV
LVNLMGNAID AMAAAPPGSP RTLRIEAAAG AAGRCVIRVR DSGPGIRADI LARLFEPFVT
SKPAGAGLGL GLMISAHLAR ELGGTLGAHN VDGAGACFVI DLPIPTAPET AAQPAPQAHE