| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4339 |
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| Symbol | |
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| ID | 6164005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4854954 |
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| End bp | 4856756 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641667116 |
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| Product | histidine kinase |
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| Protein accession | YP_001793355 |
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| Protein GI | 171061006 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCGA CCCCGATCGC CTCGCCGGCA CCTGCACGCC GCCGGATCGG CCGCAGCACC
CGCCGCGTGC TGGGCTGGGG CGGCGCGCTG CTGCTGATGG CGGCCGCGGC GCTGACCGGC
CACACGCTGT CGATGCGCGC CGGCCTGGCG CGCCTGGCCG AAGCCGCGCA GCACCGGCTC
GACCTGGTCG CCACCGGCCT GGCCAGCGAC CTGGCGCGCT TCGACTACCT GCCCGCGCTG
CTGGAGATCA CGCCCAGCGT GGCCGCGCTG CTCGACCAGC CCGACGACGC CGCGCTGCGT
GATCAGGCCA ACCGCCAGCT GCAGCGCATC AACGCCACCG CCGGCGCCGC CAACCTCTAC
GTGACCGACA CCGTCGGGCG CTGCCAGGCG GCGTCCGACT GGGAGGATCC CGGCACGCCG
ATCGGCGCCG ACCTGTCGTT CCGGCCCTAT GTGCGCGACG CGCTCGAACA CGGCCGCGGG
CGCTTCTACG GCGTCGGCGT CACCAGCCAC CGGGCCGGCT ACTACCTGTC GTACGTGCTG
ATGCAGCAGG GCCGCCAGCG CGGCGTGGCC ACCGTCAAGG TCTCGCTCGA AGCGGTCGAG
CCCTCATGGC GCAAGCTGCC CGGCGAGGTG CTGCTGGCCG ATCAGCGCGG CGTCGTCATC
CTGTCGACCC GCGAGGAGTG GAAATACCGG CCGCTCGCGC CGTTGTCGAC GCAGGTGCGC
CAGGAACTGG CCGGCAGCCG CCCCTACGGC GACGCACCGC TGGTGCCGCT GGCGATCGGC
CACGACCGTT ACCGGCGCTC CGAGCGCCTG CTCGCGCCGG TCGGCTGGCG CCTGATCGTG
CTCGACGAGC TTGCACCGGT GCGTGCCGGC GCCCGCACCA TGGCCGTCAC CGCCGCGCTG
GCCAGCGCCG TGCTGCTGCT GATCGCCACG CTCGCGCTGC AACGCCAGCG CGCGCTGCGA
CAGCGCCTCG CCAACCAGGC CGCGCTGCAG GCCGCACACG ACAGCCTGGA GGCCAAGGTG
GCCGAGCGCA CCGCCGATCT GCGCGCTGCG CAGGACGAGC TGGTGCACGC CGGCAAGATG
GCCGCGCTGG GCCAGATGTC GGCCGGCCTG GTGCACGAGA TGAACCAGCC GCTCGGCGCC
ATGCGCACGC TGTCCGACAA CGCCTGCCTG CTGCTCGAAC AGCAGCGCAC GGCCGACGTG
CAGGCCAACC TGCAGCGCAT CGGCCGCATG GTCGACCGGC TCGGCCGGCT GACCGGCCAG
CTCAAGGCCT TCGCCCACAA GGCCGCTCCG GCGCTCGAAC CGGTAAACCT GCAGCGCGCC
ATCGCCAACG CGCAGTTCCT GATCGCGCAA CGGCTGCGCG AGCAGGCCGT CGAGCTCGAC
GTGTCGGTGC AGCCCGCCGG CCTGGCCGCG CTGGCCGAAG AGACCCGGCT CGAACAGGTG
CTCGTCAACC TGATGGGCAA CGCCATCGAC GCGATGGCCG CGGCGCCCCC GGGATCGCCG
CGCACGCTGC GCATCGAGGC CGCAGCCGGC GCCGCAGGCC GCTGCGTGAT CCGCGTGCGC
GACAGCGGCC CGGGCATCCG CGCCGACATC CTGGCGCGCC TGTTCGAGCC TTTCGTCACC
AGCAAGCCGG CCGGCGCCGG CCTCGGCCTG GGCCTGATGA TCTCGGCCCA CCTCGCGCGC
GAACTGGGCG GCACACTCGG CGCCCACAAC GTCGACGGCG CGGGCGCCTG CTTCGTCATC
GACCTGCCGA TCCCCACCGC GCCGGAAACC GCCGCGCAGC CGGCGCCCCA AGCCCACGAG
TGA
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| Protein sequence | MTSTPIASPA PARRRIGRST RRVLGWGGAL LLMAAAALTG HTLSMRAGLA RLAEAAQHRL
DLVATGLASD LARFDYLPAL LEITPSVAAL LDQPDDAALR DQANRQLQRI NATAGAANLY
VTDTVGRCQA ASDWEDPGTP IGADLSFRPY VRDALEHGRG RFYGVGVTSH RAGYYLSYVL
MQQGRQRGVA TVKVSLEAVE PSWRKLPGEV LLADQRGVVI LSTREEWKYR PLAPLSTQVR
QELAGSRPYG DAPLVPLAIG HDRYRRSERL LAPVGWRLIV LDELAPVRAG ARTMAVTAAL
ASAVLLLIAT LALQRQRALR QRLANQAALQ AAHDSLEAKV AERTADLRAA QDELVHAGKM
AALGQMSAGL VHEMNQPLGA MRTLSDNACL LLEQQRTADV QANLQRIGRM VDRLGRLTGQ
LKAFAHKAAP ALEPVNLQRA IANAQFLIAQ RLREQAVELD VSVQPAGLAA LAEETRLEQV
LVNLMGNAID AMAAAPPGSP RTLRIEAAAG AAGRCVIRVR DSGPGIRADI LARLFEPFVT
SKPAGAGLGL GLMISAHLAR ELGGTLGAHN VDGAGACFVI DLPIPTAPET AAQPAPQAHE
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