Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4331 |
Symbol | |
ID | 6164057 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4846854 |
End bp | 4848458 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641667108 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001793347 |
Protein GI | 171060998 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein [COG4564] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.555356 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACTGG GGGACCACCG GAGTATTCGC CAAGTGTCCA CACCCACCAG CTTCAGACAG CGCCTTCAGA CGCTGGTCGC CGTCTCTCTG CTGGCCGTTC TGGCCTTTTC GGTCGCCACC GTCTGGATGA CGCGCGATCA GATCACGAGC GGCCGCAAGG CGGTGCTGGT GGCCACGGTC GAATCGGCAC ACAGCCTCGT GATGAGCTTT CACGACCAGG CCAAGGCGGG CCGGATGTCC GACGAACAGG CGCGGGCGGC CGCCGTGGCG GCGCTGCGCG GCATCCGCTA CGGCAACGGC GACTACGTCT ACGTCTGGAG CCTGGAAGGC GTGGGCGTGA TGCACCCGAT CAAGCCGGAA TGGGAAGGCC AGATGATGAT CGGCAAGGTC AAGGACGGCA CCGGGGGTGA CGTGATCGGC GCCCTGTCGG CCGGCATGAA GGCCAGCCGC GACGGCACCG CCTTCGTCGA GACCCACTTT CCCCGCCCCG GCCATACCGA GCCGGTGGCC AAGCTGCAGT TCCTCAAGCA GGTGCCCGAC TGGAACTGGA TGGTGGGCTC GGGCCTGTAC ATGGACGACG TGAGCGCCGC GGTGCGCACC ACCACGCTGC AGGTCGGCGC GCTCGCGGCC GCGATCCTGC TGGGCATCGG CGCCGTCTGC CTGTGGACCT ACCGCGGCGT CCTGCACCAG CTGGGGGGCG AGCCTGCGCT GGCGGCACAG GTCATGTCGC AGGTGGCCCA GGGCCAGCTC GACATCGCCA TCCCCACGGC ACCGGCCGGC AGCCTGATGG ACGACCTGCG ACTGATGGTG CAGTCCTTGC GCGGCACCGT GTCGCAGGTG CGTGAAACGT CGGACAGCGT GAACCTGGCC GCCGGCGAGA TCGCCAACGG CAATGCCGAT CTCGGTGCCC GCACCGAGCA GACCGCGGCC AGCCTGCAAC GCACCGCCAG TGCGATGGAG CAGCTCGTCA GCACGGTGCG GCACACGGCC GAGTCGGCCG GCAACGCCAA CGCGCTGGCC GCCTCGGCCG CCGCCGAGGC CCAGCGCGGC GGTGCGGCCG TGACCGCCGT CGAGCACACG ATGGGCGAGA TCAACCAGTC CAGCGCCCGC ATGGCCGACA TCATCGGCAC CATCGACGGC ATCGCCTTCC AGACCAACAT CCTCGCGCTC AACGCAGCCG TCGAGGCCGC ACGTGCCGGC GAGCAGGGCC GCGGCTTCGC GGTGGTAGCC AGCGAGGTGC GCACGCTGGC GCAACGCAGT GCGGACGCGG CCAAGGAAAT CCGCCAGCTC ATCACCGCCA GCATCGACAA GGTGACCTCC GGCGCCCGCC AGGTGGGCGA CGCCGAACGG ACCATGCGCG ACATCGTCGA CTCGGTTCAA CGGGTGTCGG CCATCGTCAG CGAGATCAGC GTGGCGTCTG CGCAGCAGAG CCAGGGCCTG TGCGACGTCA GCGGCGCGGT GTCGCAGCTC GAAGAGATGA CGCAGCGCAA CGCCGCGCTG GTCGAGCAGT CGGCCGCGGC GGCGCACAGC CTGCACGAAC AGTCGCACCG ACTCTCCGCC GCCATCAGCA GCTTCCAGGT CGACCGAAGC CTGGCGCCGG CCTGA
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Protein sequence | MTLGDHRSIR QVSTPTSFRQ RLQTLVAVSL LAVLAFSVAT VWMTRDQITS GRKAVLVATV ESAHSLVMSF HDQAKAGRMS DEQARAAAVA ALRGIRYGNG DYVYVWSLEG VGVMHPIKPE WEGQMMIGKV KDGTGGDVIG ALSAGMKASR DGTAFVETHF PRPGHTEPVA KLQFLKQVPD WNWMVGSGLY MDDVSAAVRT TTLQVGALAA AILLGIGAVC LWTYRGVLHQ LGGEPALAAQ VMSQVAQGQL DIAIPTAPAG SLMDDLRLMV QSLRGTVSQV RETSDSVNLA AGEIANGNAD LGARTEQTAA SLQRTASAME QLVSTVRHTA ESAGNANALA ASAAAEAQRG GAAVTAVEHT MGEINQSSAR MADIIGTIDG IAFQTNILAL NAAVEAARAG EQGRGFAVVA SEVRTLAQRS ADAAKEIRQL ITASIDKVTS GARQVGDAER TMRDIVDSVQ RVSAIVSEIS VASAQQSQGL CDVSGAVSQL EEMTQRNAAL VEQSAAAAHS LHEQSHRLSA AISSFQVDRS LAPA
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