| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4329 |
|---|
| Symbol | |
|---|
| ID | 6164055 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4843130 |
|---|
| End bp | 4844293 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641667106 |
|---|
| Product | oxidoreductase domain-containing protein |
|---|
| Protein accession | YP_001793345 |
|---|
| Protein GI | 171060996 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.173882 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACA ACAGCTTCAA ACGCCCCTTG CGATGGGGTT TGGTGGGCGG CGGGCAGGGC
GCCTTCATCG GCGCGGTGCA CCGCATCGCG GCGCGGCTGG ATGGGCAGTA CGTGATGGTG
GCGGGCGCGC TGTCGTCCGA CCCACAACGC GCCCGCGCGA GTGGCGCCGA GCTGGGTCTG
GCACCCGATC GCTGCTACGC CGACTACCGC GAGATGGCGC GTGCCGAGGC TGCAAGGCCC
GACGGCATCG AGGTGGTTTC GATCGCCACG CCCAATCACC TGCACCACCC GGTCGCCTGC
GCCTTCATCG ACGCCGGGAT CCACGTGCTG TGCGACAAGC CGCTCACCAC CACGTTGGCC
GATGCGCTGG ATCTGCGTGA ACGCGTCAAG ACACGCGGCG TGCGTTTCGG CCTGACGCAC
AACTACAGCG CCTACCCGCT GGTGCGCGCC GCACGCGCGA TGGTGGCGGC CGGCGAGCTG
GGCGAGATCC GCATCGTGCA GGTCGAATAC ACGCAGGACT GGCTCGCCAC GCCGCTCGAA
GCCACTGGCC ATGTCATTGG ACACAAGCAG GCCTCGTGGC GCACCGATCC GGCGCTCAAC
GGCCCGGCCG GTGCGCTGGG CGACATCGGC ACGCACGCCG CGCAACTGGC CGAGTTCATC
AGCGGCATGG CCCCCGCCGA GCTGAGTGCC GACGTCACCA CCTTCGTCGC CGGCCGGCGG
GTCGACGACC ACATCCAGGT GCAGCTTCGT TATGCCTCGG GCGCACGCGG CCTGCTGTGG
GCCAGCCAGG TCGCGTGTGG TGAAGAGAAC CACCTGCGCA TCCGCATCTA CGGCACCCAG
GCCGCGATCC ACTGGGATCA GGAACAGCCC AACGAGCTGA CCTTTCATCC GGCCGGACAA
CCCGCCCGGC GCCTCACGCG CGGCATGGCG GGGTTGCCAT CGGTGGCGGC CGAAGCGACC
CGCATCCCCA CCGGCCATCC CGAGGGCTAC CTCGAAGCCT TCGCCCAGCT CTACCGCGAT
TTCGCGCAGG ACGTGCGCGA CGCGCAAGCG GGCCTGATCA CACCCGCGCG CGTACCCGGC
CTCGACGACG GCGTGCGCAG CATGGCCTTC GTCGAAGCGG TGCTGCGCAG CGGCGCGGCC
AATGCGGCCT GGACCGCACT CTGA
|
|---|
| Protein sequence | MSDNSFKRPL RWGLVGGGQG AFIGAVHRIA ARLDGQYVMV AGALSSDPQR ARASGAELGL
APDRCYADYR EMARAEAARP DGIEVVSIAT PNHLHHPVAC AFIDAGIHVL CDKPLTTTLA
DALDLRERVK TRGVRFGLTH NYSAYPLVRA ARAMVAAGEL GEIRIVQVEY TQDWLATPLE
ATGHVIGHKQ ASWRTDPALN GPAGALGDIG THAAQLAEFI SGMAPAELSA DVTTFVAGRR
VDDHIQVQLR YASGARGLLW ASQVACGEEN HLRIRIYGTQ AAIHWDQEQP NELTFHPAGQ
PARRLTRGMA GLPSVAAEAT RIPTGHPEGY LEAFAQLYRD FAQDVRDAQA GLITPARVPG
LDDGVRSMAF VEAVLRSGAA NAAWTAL
|
|---|
| |