| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4320 |
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| Symbol | |
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| ID | 6161198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4833283 |
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| End bp | 4834665 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641667097 |
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| Product | beta-galactosidase |
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| Protein accession | YP_001793336 |
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| Protein GI | 171060987 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2723] Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase |
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| TIGRFAM ID | [TIGR03356] beta-galactosidase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.952407 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATGC CACCCAACGC CGCCGCCAAC CCGATCGCGC CCCCTGCAGG CTCGGCCATG
AACCGTCGGG ATTTCGTCTG GGGCGTGGCC ACCGCCAGCT ACCAGATCGA GGGCGCCATC
GATGCCGACG GCCGTCTGCC GAGCATCTGG GACACCTTCT GTGCCACGCC CGGCAAGGTG
CTCAGGGGCG AGACCGGCGC GCTCGCCTGC GACCACTATC ACCGCTGGGA ATCGGATGTC
GACCTGATCG CCGACCTGGG TGTCGACGCC TACCGCCTCT CGATCGCCTG GCCACGCGTG
ATGCACGCCG ATGGCCGGCC GAATCAGGCC GGGCTCGACT TCTACAAGCG CCTGCTCGAC
CGCCTCGCCG AGCGTGGCGT CAAGTGCATG GCCACGCTGT ATCACTGGGA CTTGCCGCAG
CACCTCGAAG ACCGCGGCGG CTGGCTCAAC CGCGACACGG CCTATCGTTT TGCCGACTAC
GCCGACCTCG TCAGCCGTGA GTTGTCGGGC CGTGTGAACG CCTACGCCAC GCTCAACGAG
CCGTGGTGCT CGGCTTTCCT CGGCTACGGC AACGGCCATC ACGCACCGGG CCTGGCCAAC
GGCCGCTACG CCACGCAGGC GATGCATCAC CTGCTGCTGG CGCACGGCCT GGCGCTGGCG
CCGCTCGCGG CCAACGACCC GCAGGCGCAG CGCGGCATCG TCGCCAACGT CGGCCGCGGC
AGCACGCTGG GCGACAGCGC CGCCGACCAC GAGGCCGCAC GCTTGTTCGA GTTGCAGCAC
AACGACTGGG TGCTGCAGCC GCTGCTCAAG GGCAGCTACC CGCAGGACCT GTTCAAGCTC
TGGCCCGGCA CCGAGCCGCT GGTGCTCGAC GGCGACCTGG CCACCATCAG CGGGCCGCTC
GATTTTCTCG GCATCAACTA CTACTTCCGC AGCACCGTGC AAAGCGACGG CGCACACGGT
TACACCGAGG TCACGCGGCC CGACGTCGAG CGCACGCAGA TGGGCTGGGA GGTGTACCCG
CAAGGCCTCG AAGACCTGCT GCGCGGCTTC CACACCAGCT ACCCGAACCT GCCGCCGATC
TACATCACCG AAAACGGCAT GAGCAGCGAT GACCGCGTGG TGAATGGCCC CAACGGCCCG
CGTGTGGACG ATGCGCAGCG CCAGAGCTTC CTGCAGCGCC ATTTCGCTGC CATCAGTCGC
GCCATCGACG CCGGCGTGGA CGTGCGCGGC TACTACATCT GGTCGCTGAT GGACAACTTC
GAGTGGGCCT TCGGCTACGA GCGCCGATTC GGCCTGGTGC ATGTCGATTA CGCCACCCAG
CAGCGCACCC TGAAAGACAG CGCGCTGCTG TTCCAGCACT ACCTGGCGCA GCGCAAGGGC
TGA
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| Protein sequence | MNMPPNAAAN PIAPPAGSAM NRRDFVWGVA TASYQIEGAI DADGRLPSIW DTFCATPGKV
LRGETGALAC DHYHRWESDV DLIADLGVDA YRLSIAWPRV MHADGRPNQA GLDFYKRLLD
RLAERGVKCM ATLYHWDLPQ HLEDRGGWLN RDTAYRFADY ADLVSRELSG RVNAYATLNE
PWCSAFLGYG NGHHAPGLAN GRYATQAMHH LLLAHGLALA PLAANDPQAQ RGIVANVGRG
STLGDSAADH EAARLFELQH NDWVLQPLLK GSYPQDLFKL WPGTEPLVLD GDLATISGPL
DFLGINYYFR STVQSDGAHG YTEVTRPDVE RTQMGWEVYP QGLEDLLRGF HTSYPNLPPI
YITENGMSSD DRVVNGPNGP RVDDAQRQSF LQRHFAAISR AIDAGVDVRG YYIWSLMDNF
EWAFGYERRF GLVHVDYATQ QRTLKDSALL FQHYLAQRKG
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