| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4313 |
|---|
| Symbol | |
|---|
| ID | 6163096 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4824975 |
|---|
| End bp | 4825997 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641667090 |
|---|
| Product | peptidase domain-containing protein |
|---|
| Protein accession | YP_001793329 |
|---|
| Protein GI | 171060980 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.538943 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCTC CGAAATGCTG CTTCGACCGC ATCCTGCCGC GTGACCTGCT GCGCCCGCAG
GCCACCCTCG CCGGCCCCGG CGGGCGCACG CGTGCGATAT CGCCCAAGGG CAAGACGTGG
ATCAACGGCT CGACCCTGCG GGTGCGCTTC ATGGGCGGCA CGGCCGCCGA ACAGGCCCGC
ACCCGCGAGC AGGCCGGCTG GTGGTCGGCG GTGTGCAACC TGAAGTTCGA CTTCGGCAAC
GCGCCCGAGG CCGAGATCCG CATCAGCTAC GACGGCAACG ACGGTGCCTG GTCGATGCTC
GGCACCGACG CGCGCAGCAT CCCGTTCAAC CAGGCGACCA TGAACCTCGG TTTCATGGAC
GGCGGCACCG CGGCGCACGA GTTCGGCCAC GCCATCGGAC TGGCGCACGA ACATTCGAGT
CCGGCCGGTG GCATCCAGTG GAACGAGCAG GCGGTGATCC GCTCGCTGGC AGGCCCGCCC
AACTTCTGGG ACGAGGCGAC CACCCGCCAC AACGTCTTCT TCAAGTACGG GATGGACCAG
ATCAACGGCA CGCAGTTCGA TCCGGACTCG ATCATGCTGT ACGCGTTTCC GGCCGAGTGG
ACGCTCAACG GCGTGGCCAC GCACGCCAAC GAGGTGCTGT CGGCGCTGGA CCGCGAGTTC
GTGGCCGGCG CGCGCATGTA CCCCAAGACC CAGCCCGGCC TGCCCGCGGC CACGCCGCTG
ACGGTGGGCG CCTCGCGCAT CAGCGCGAGC ATCGGCAAGG CCGGCGAGGA GGACCTGTTC
CGCTTCCATG CCGACACGAA CGGCGTCTAC GTCATCGAGA CCATGGGCAT CACCGACGTC
TACATGAAGC TGTTCGGCCC GAACAGCGCG ACCGCACTGC TGGCCGAGGA CGACGACAGC
GGCTTCGGCC TGAACCCGCG CATCTCGGCG CCGCTGCTGG CCGGCGACTA CTTCGTGCAG
GTGCGCCACT ACGACCGCAG CGGCGGCACC GGGCGCTACT CGGTGGGCGT CAAGCGGCGC
TGA
|
|---|
| Protein sequence | MAAPKCCFDR ILPRDLLRPQ ATLAGPGGRT RAISPKGKTW INGSTLRVRF MGGTAAEQAR
TREQAGWWSA VCNLKFDFGN APEAEIRISY DGNDGAWSML GTDARSIPFN QATMNLGFMD
GGTAAHEFGH AIGLAHEHSS PAGGIQWNEQ AVIRSLAGPP NFWDEATTRH NVFFKYGMDQ
INGTQFDPDS IMLYAFPAEW TLNGVATHAN EVLSALDREF VAGARMYPKT QPGLPAATPL
TVGASRISAS IGKAGEEDLF RFHADTNGVY VIETMGITDV YMKLFGPNSA TALLAEDDDS
GFGLNPRISA PLLAGDYFVQ VRHYDRSGGT GRYSVGVKRR
|
|---|
| |