Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4307 |
Symbol | |
ID | 6163084 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4819008 |
End bp | 4819916 |
Gene Length | 909 bp |
Protein Length | 302 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641667084 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001793323 |
Protein GI | 171060974 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCATCG ATACCCTGGC CCATGAGATC GGCCGAATTG CCCGAAACGA CGGCCCTTGC CTGACCGAAC TGCCCGACCT GACGCTCTTC CGCAGCAGCC TCAAGACCGA GCCGACGCCC TGCATCTATG CGCTCGGGCT GACCGTCGTC GCGCAGGGTG GCAAGCAGGT CACGGCCGGT GAGCAGGTGA TCGATTACGG GCCGGGCCAG TCGCTGCTGA CTGCCGTCGA TCTGCCGGTG ATCGGGCAGG TCACCCGGGC CGACCTGGCG CGGCCGTTCC TGGGGCTGGT GCTGACGCTG GATGCACGCG CGCTGGTGCA GGCCGCCGCC GAGATGGATC GGCCACCCCT GCCGCGCGAC CCGGCGCCGC GCGCGATCTC GCGGTGTGAG ACCGAAGCGC CCTTGCTCGA CGCGCTGATC CGCCTGGTCC GGCTGCTGGG CGAGCCGCAG CTGATCGCGC ATGTCGCGCC GCTGATCCGG CAGGAGATCA TGCTGCGCCT GCTGTGCGGC CCGCACGGCC CCTACCTGCG CCACCTGCTG GCGGCGGGCT CGCCCAGCCA TCAGATCGCG CGCGCGATGG CGTGGCTCAA GCAGAACTTC ACCGGCGACG TGCGGATCGA TGATCTGGCC GCCAGCGTGC ACATGAGCCC GTCGACCTTC CGGCAGCACT TTCGCGGCCT GACCGGCATG AGCCCGCTGC AGTATCAGAA GCAGCTGCGC CTGCAGGAGG CGCGGCAGCT GATGCTCAGC CACGACCTCG ACGCCGGCAG CACCGCCGCT CGGGTGGGCT ACGAAAGCGC CTCGCAGTTC AGCCGCGACT ACAGCCGGCT GTTCGGCGCG CCGCCGCAGC GCGACATCCG GCGCATGCGG CATCCGGGCG AGGGTGGCGT CGAGCCGGCG ATGCCCTGA
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Protein sequence | MPIDTLAHEI GRIARNDGPC LTELPDLTLF RSSLKTEPTP CIYALGLTVV AQGGKQVTAG EQVIDYGPGQ SLLTAVDLPV IGQVTRADLA RPFLGLVLTL DARALVQAAA EMDRPPLPRD PAPRAISRCE TEAPLLDALI RLVRLLGEPQ LIAHVAPLIR QEIMLRLLCG PHGPYLRHLL AAGSPSHQIA RAMAWLKQNF TGDVRIDDLA ASVHMSPSTF RQHFRGLTGM SPLQYQKQLR LQEARQLMLS HDLDAGSTAA RVGYESASQF SRDYSRLFGA PPQRDIRRMR HPGEGGVEPA MP
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