Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4294 |
Symbol | |
ID | 6161778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4804820 |
End bp | 4805944 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641667071 |
Product | XRE family transcriptional regulator |
Protein accession | YP_001793310 |
Protein GI | 171060961 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAGCGAG TGCTTCAACC AGAACCCATC CGCGCCGCCC TGGCTGCCAA GGGGTGGGAT CAGAAACAGC TGGCGCAGAC GATCGGTGTC AGTGCCCAGG CCGTCACCAA CTGGATGAAG GGGGAAGATT TCCCCCGGCC GGCCACCCTT CTCAAGCTCG CGACAGCCTT GTCGCTCAGC TTTGACGAGC TGGTGCATCT GCCGCAACGG GACGAACCGA TCATCGCGTT CCGCAAGAAG ACGGGCACCA AGACGACCGA CGAACATGTG CTGCGGGCCA AGGCGATGGG CGCCCTGCTC AAGCCTCTGG TGCCGTTTTT GCCCCCGCGC AAGGCCCTGC GCACCCAGAT CCCATCGGCC TCGACCGAGT ACGAACTTCT GCAGAACGCA GCAGCATCGG TGCGCGCGAA GTTGGGCATC GGCGCTGAGT CGGTGCTGAC CTACGAGCGT CTCATCGCCG AGTTCGACGC CAACGATGCG GTGCTCATCC CGGTGATGTG GGGAAAGAAA GACCGTCACG AAAACGCCTT GCACATCCTG CTGCCTGGCG ATCAAGTAAC GTTCATCTAC TTGAACCTCG ACACCCATCT CGAAGACTTC AAGTTCTGGA TGGCGCATGA GCTGGCGCAC GTCTACACGC CCGACCTCGC CGGCAAGGAC GCGGGAGAAG ACTTCGCGGA TGCGTTCGCG GGCAGCCTGC TGTTCCCGCG TGAACTGGCC CGGCATGCGT ATGCGGAGGC CAGCCGTGCC CCGACCGCTG CGGCCGAAAT GCAGGCGCTG CAACAGTTTG CGCATCAGCA CATGATCTCG CTGTTCACCG TCTACACACA GGTGAGCCGG CATGCGACGG CTGCAGGATT GCGGCCCCTG CGAGTGGCAG ACAAGAGCAT CCACGCGGTG CGCAACAGCG GACGCGGTGC GCTGGTCAGC CAGGCATTGT TCGAGCCGAT GCCGCCCGAT CCGTCGACCT ACATCGCCGC GGCTCACAAC GTCTTTCAGT CGGCGTTTTT CCCGGCCCTG CGACGCATGC TGCACGAACG CGGCACCGGG GTCGGCTACG TTCAACAACT GCTCGATGCG TCGATCGCCG ATGCGCAGGC CCTGCACACC GAGTTGATCC GTTGA
|
Protein sequence | MQRVLQPEPI RAALAAKGWD QKQLAQTIGV SAQAVTNWMK GEDFPRPATL LKLATALSLS FDELVHLPQR DEPIIAFRKK TGTKTTDEHV LRAKAMGALL KPLVPFLPPR KALRTQIPSA STEYELLQNA AASVRAKLGI GAESVLTYER LIAEFDANDA VLIPVMWGKK DRHENALHIL LPGDQVTFIY LNLDTHLEDF KFWMAHELAH VYTPDLAGKD AGEDFADAFA GSLLFPRELA RHAYAEASRA PTAAAEMQAL QQFAHQHMIS LFTVYTQVSR HATAAGLRPL RVADKSIHAV RNSGRGALVS QALFEPMPPD PSTYIAAAHN VFQSAFFPAL RRMLHERGTG VGYVQQLLDA SIADAQALHT ELIR
|
| |