| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4280 |
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| Symbol | |
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| ID | 6160627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4788753 |
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| End bp | 4790942 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641667057 |
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| Product | putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane |
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| Protein accession | YP_001793296 |
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| Protein GI | 171060947 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACAAC AGACCTTCCG TATCACGGCA GTCGCAGCCA GCGTGCTCAT GCTGGCCGCC
TGCGGCGGTG GCGACAGCGC CGCCGTGACC CCGGCCGAGG CGATCAACGC CCTGCCCACG
GCCGTGCGCG GCGCCGTGAC GGTGAGCACC TACGACGGCG CCACCGATGA CCTGCTCACC
GCCGGCCTGG GCCGTGCCGG ACTGATGGGC GGGGCGCCGA CCTACGTCGA CGCCGCCGCA
CCCACCGCCG CCGAGCTGCG CCGCAACGCG ATCTACAACA ACTACCGCGC GCTGGTCGAC
CCCACCGCCC TCGGCGGCAT GGGCACGCTC TACGGCCCCA ACGTCGACAC CGCCGGCTCG
GCGACCAACA ACGCCGGCCT GATCGCCGGG CGCGAATACA TCGCCTGGGC CGACGACGGC
ACCGGCCGCC AGAACGTCAC GCTGATGGTG CAGGTGCCCA ACCACTTCGA CCCGGCGCGG
CCGTGCATCG TCACCGCCAC CTCGTCGGGC TCGCGCGGCA TCTACGGCGC CATCGGCACC
GCCGGCGAAT GGGGCCTCAA GCGCGGCTGC GCGGTCGCCT ACACCGACAA GGGCACCGGC
AACGGCCTGC ACGACCCCAC CAGCGGCCTG GTGATGAGCC GCAACGGCAG CACCACCACC
GCCACGGTGG CCGGGCTCGA ATCGATCTTC AGCCTGCCCG ACAGCCTCGC CAGCCTGAGC
ACCTTCGTCG GCAGTTTCGC CAACCGGGTC GGCTTCAAGC ACGCCCACTC GCAGCAGAAC
CCCGAGAAGG ACTGGGGCCG CAACACGCTC GACGCCGTGC GGCTGGCCTT CTACGTGCTC
AACGAACGCT ACGGCGCCGT CAGCACCACC GACCCGACCA AGCGGCAGCA GACCTTCAAG
GCGTCCAACA CGCTGGTGAT CGCGTCCTCC GTGTCCAACG GCGGCGGCGC CGCACTGGCC
GCGGCCGAGC AGGACACCGA AGGCTTGATC GACGGCATCG CCGTCTCCGA GCCCAACGCC
CAGCCCGGCA GCAACACCAC GCTGGCGATC CAGCAAGGCA CGGCCACGCC GGTGGCCACG
CACAGCAAGC CGCTGATCGA CTACTTCACC TACGCCAACC TCTACCAGCC CTGCGCCGCC
CTGTCGACGT CGGCCAGCAG CGGCACCGGG GTGGGCGCAG CCTTCTGGCC GGCGGCGTTC
ACCACCTCGG CGCAGAACCG CTGCGCGATG CTCAAGGCCA AGGGCCTGAT CGCGGGTGAC
ACGCTGGCAG CACAGGCCGA CGACGCGCTC GCAAAGCTCA ACCAGTACGG CTGGCAGAGC
GAGCAGAACT TCTTCCACCA GTCGCACTTC CGGCTCGCCA CCAACGCGAT CGTCGTCACC
TACATCAACA GCTACGGCCG CTTCAGCGTG ACCGACAACG TCTGCGGCTA CAGCATGGCC
AACACCGACG CGGCCGGCGA CGTGATCGCG CAAGCTCCGG GAACCCAGGC CGGTCTGTTC
GCCAGCGGTA ACGGTGTGCC GCCGACCGGC GGCGTCAACA TCGTCTACAA CAACTCGTTC
CTCACCAGCA CCACCAGCGT CGCCAAGCTC GACTTCCTGG CGGTCTCGCC GTCGACCACG
GTGGCCGACT TCGCGCTCGA CGGCGCGCTG TGCATGCGCT CGCTGGTGAC CGGCCTCGAT
CCGGTCAACG GCGCGGCCCT GACCGGCACG CTCAAGGCCC AGTCGGACCG CGTCATCGCC
GGCATCAACG AGGTGCAGCT CAGTGCCCGG TTGCGTGGCA AGCCGACCGT CATCGTGGCC
GGCCGCACCG ACACGCTGCT GCCGGTCAAC CACACGGCGC GGGCCTACTT CGGCAAGAAC
CAGCTGGTCG ACGGCAGCGC CGCCGCCAAC GTGCGTTATT ACGAGGTCAC CAACGCGCAG
CACTTCGACA GCTTCATCGG CTTCGGCGCA CTGCTCGGCT ACGACACCCG CGTGGTGCCG
CTGCATCCCT ACCTGTTCAA CGCGCTCGAC CTGATGTACG AGCACCTGCA GCGTGGCCAG
GCCCTGCCGC CGAGCCAGGT GGTGCACACC ACGCCGCGAG CCAGCGGCGC CGATGCACTG
ACGCGCACCC ACGTGCCGGC GATCGCCACC AGCCCGCTGG CGGCGAACCT GATCACGATG
TCGGGTTCGA CGCTCAAGGT GCCCGACTGA
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| Protein sequence | MQQQTFRITA VAASVLMLAA CGGGDSAAVT PAEAINALPT AVRGAVTVST YDGATDDLLT
AGLGRAGLMG GAPTYVDAAA PTAAELRRNA IYNNYRALVD PTALGGMGTL YGPNVDTAGS
ATNNAGLIAG REYIAWADDG TGRQNVTLMV QVPNHFDPAR PCIVTATSSG SRGIYGAIGT
AGEWGLKRGC AVAYTDKGTG NGLHDPTSGL VMSRNGSTTT ATVAGLESIF SLPDSLASLS
TFVGSFANRV GFKHAHSQQN PEKDWGRNTL DAVRLAFYVL NERYGAVSTT DPTKRQQTFK
ASNTLVIASS VSNGGGAALA AAEQDTEGLI DGIAVSEPNA QPGSNTTLAI QQGTATPVAT
HSKPLIDYFT YANLYQPCAA LSTSASSGTG VGAAFWPAAF TTSAQNRCAM LKAKGLIAGD
TLAAQADDAL AKLNQYGWQS EQNFFHQSHF RLATNAIVVT YINSYGRFSV TDNVCGYSMA
NTDAAGDVIA QAPGTQAGLF ASGNGVPPTG GVNIVYNNSF LTSTTSVAKL DFLAVSPSTT
VADFALDGAL CMRSLVTGLD PVNGAALTGT LKAQSDRVIA GINEVQLSAR LRGKPTVIVA
GRTDTLLPVN HTARAYFGKN QLVDGSAAAN VRYYEVTNAQ HFDSFIGFGA LLGYDTRVVP
LHPYLFNALD LMYEHLQRGQ ALPPSQVVHT TPRASGADAL TRTHVPAIAT SPLAANLITM
SGSTLKVPD
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