Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4274 |
Symbol | |
ID | 6161222 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4782621 |
End bp | 4783484 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641667051 |
Product | transketolase domain-containing protein |
Protein accession | YP_001793290 |
Protein GI | 171060941 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3959] Transketolase, N-terminal subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACGA CAACCGCTGA ACGGGCCGAA CTGGCCGAGC TTCGACAAGT GGCCTACCGC ATCCGCCGCA ATGCCTTGCG CATGGGCGAG GTGCAGGGCC AGGGCTACAT CGGCCAGGCG CTGGGCTGGG CCGACGTGCT GGCGGTGGCC TACGGCCACG CACTCAACCT GCGCCCCGAC GAACCCGAAT GGGAGGGCCG CGACCGCTTC CTGCTCTCGC ACGGCCACTA CGCGATCGCG TCCTACGCCG CGCTGATTGA GGCCGGCATC ATCCCCGAGA GCGAACTCGA AACCTACGGC AGCGACGACA GCCGCCTGCC GATGTCGGGC ATGGCGACCT ACACGCCCGG CATGGAGATC TCGGGCGGCT CGCTGGGCCA GGGCCTGGCG ATCGGCGTGG GCATGGCGCT GGGCCTGAAG CACAAGAAGA ACCCGGCCTT CATCTACAAC TCGATGTCCG ACGGCGAGCT CGACGAGGGC GCGGTCTGGG AGGCCGCGAT GGGTGCCGCG CACCACCGCC TGGACAACCT GATCTGCCTG ATCGACATCA ACAACCAGCA GGCCGACGGC CCGTCGTCGA AGGTGATGGG CTTCGAGCCG CTGGCCGACA AGTGGGCCGC CTTCGGCTGG CACGTGCAGC GTGTCGACGG CAACGATCTG GCGGCGGTGC TGGAGGCCTT CGACGCCGCA CGCAACCTGA CCGAAGCCAA GCCGCGCGTG ATCCTGTTCG ACACGCTGAT GGGCAAGGGC GTGCCCTTCC TGGAGACGCG CGACAAGAAC CATTTCATCC GCGTCGACCC GCCGGAGTGG CAGCAGGCCC TGCAGATCCT GGATCAATCG CAAGCTGAAG GAGCGCAAGC ATGA
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Protein sequence | MTTTTAERAE LAELRQVAYR IRRNALRMGE VQGQGYIGQA LGWADVLAVA YGHALNLRPD EPEWEGRDRF LLSHGHYAIA SYAALIEAGI IPESELETYG SDDSRLPMSG MATYTPGMEI SGGSLGQGLA IGVGMALGLK HKKNPAFIYN SMSDGELDEG AVWEAAMGAA HHRLDNLICL IDINNQQADG PSSKVMGFEP LADKWAAFGW HVQRVDGNDL AAVLEAFDAA RNLTEAKPRV ILFDTLMGKG VPFLETRDKN HFIRVDPPEW QQALQILDQS QAEGAQA
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